Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04047 and SMc04048 are separated by 46 nucleotides SMc04048 and SMc04049 are separated by 72 nucleotides
SMc04047: SMc04047 - pseudoazurin (blue copper protein), at 3,052,186 to 3,052,629
SMc04047
SMc04048: SMc04048 - cytochrome c protein, at 3,052,676 to 3,053,017
SMc04048
SMc04049: SMc04049 - sulfite oxidase, at 3,053,090 to 3,054,289
SMc04049
Position (kb)
3052
3053
3054 Strain fitness (log2 ratio)
-1
0
1 at 3051.695 kb on + strand at 3051.695 kb on + strand at 3051.704 kb on + strand at 3051.704 kb on + strand at 3051.704 kb on + strand at 3051.704 kb on + strand at 3051.821 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.823 kb on - strand at 3051.985 kb on - strand at 3051.985 kb on - strand at 3052.072 kb on - strand at 3052.072 kb on - strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.127 kb on + strand at 3052.128 kb on - strand at 3052.128 kb on - strand at 3052.128 kb on - strand at 3052.128 kb on - strand at 3052.128 kb on - strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.131 kb on + strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.132 kb on - strand at 3052.133 kb on + strand at 3052.133 kb on + strand at 3052.133 kb on + strand at 3052.133 kb on + strand at 3052.134 kb on - strand at 3052.140 kb on + strand at 3052.248 kb on - strand, within SMc04047 at 3052.248 kb on - strand, within SMc04047 at 3052.337 kb on + strand, within SMc04047 at 3052.337 kb on + strand, within SMc04047 at 3052.337 kb on + strand, within SMc04047 at 3052.337 kb on + strand, within SMc04047 at 3052.338 kb on - strand, within SMc04047 at 3052.338 kb on - strand, within SMc04047 at 3052.343 kb on + strand, within SMc04047 at 3052.343 kb on + strand, within SMc04047 at 3052.343 kb on + strand, within SMc04047 at 3052.344 kb on - strand, within SMc04047 at 3052.560 kb on - strand, within SMc04047 at 3052.560 kb on - strand, within SMc04047 at 3052.633 kb on - strand at 3052.633 kb on - strand at 3052.707 kb on + strand at 3052.787 kb on - strand, within SMc04048 at 3052.864 kb on + strand, within SMc04048 at 3052.864 kb on + strand, within SMc04048 at 3052.865 kb on - strand, within SMc04048 at 3052.865 kb on - strand, within SMc04048 at 3052.970 kb on + strand, within SMc04048 at 3052.971 kb on - strand, within SMc04048 at 3052.971 kb on - strand, within SMc04048 at 3052.971 kb on - strand, within SMc04048 at 3053.036 kb on + strand at 3053.214 kb on + strand, within SMc04049 at 3053.214 kb on + strand, within SMc04049 at 3053.214 kb on + strand, within SMc04049 at 3053.330 kb on + strand, within SMc04049 at 3053.331 kb on - strand, within SMc04049 at 3053.490 kb on + strand, within SMc04049 at 3053.550 kb on + strand, within SMc04049 at 3053.551 kb on - strand, within SMc04049 at 3053.554 kb on + strand, within SMc04049 at 3053.554 kb on + strand, within SMc04049 at 3053.554 kb on + strand, within SMc04049 at 3053.557 kb on + strand, within SMc04049 at 3053.558 kb on - strand, within SMc04049 at 3053.889 kb on + strand, within SMc04049 at 3053.889 kb on + strand, within SMc04049 at 3053.890 kb on - strand, within SMc04049 at 3053.918 kb on + strand, within SMc04049 at 3053.918 kb on + strand, within SMc04049 at 3053.984 kb on + strand, within SMc04049 at 3053.985 kb on - strand, within SMc04049 at 3053.985 kb on - strand, within SMc04049 at 3053.985 kb on - strand, within SMc04049 at 3053.993 kb on + strand, within SMc04049 at 3053.994 kb on - strand, within SMc04049
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 3,051,695 + -0.5 3,051,695 + -0.3 3,051,704 + +0.5 3,051,704 + +0.6 3,051,704 + -0.4 3,051,704 + -0.5 3,051,821 - +0.9 3,051,823 - -0.1 3,051,823 - +0.8 3,051,823 - +0.1 3,051,823 - -0.1 3,051,823 - +1.3 3,051,823 - +1.5 3,051,823 - +0.4 3,051,823 - -0.8 3,051,823 - +0.7 3,051,823 - +0.4 3,051,985 - -0.9 3,051,985 - +0.3 3,052,072 - +0.3 3,052,072 - -0.3 3,052,127 + +0.1 3,052,127 + -0.0 3,052,127 + -0.1 3,052,127 + +0.0 3,052,127 + -1.3 3,052,127 + +0.1 3,052,127 + +0.8 3,052,128 - +0.8 3,052,128 - -1.2 3,052,128 - +0.3 3,052,128 - -0.4 3,052,128 - +0.2 3,052,131 + +0.1 3,052,131 + +1.0 3,052,131 + -0.3 3,052,131 + -0.4 3,052,131 + -0.1 3,052,131 + +0.1 3,052,131 + -1.3 3,052,131 + -0.4 3,052,131 + +0.1 3,052,132 - +0.4 3,052,132 - +0.4 3,052,132 - -0.9 3,052,132 - +0.1 3,052,132 - -0.1 3,052,132 - -0.2 3,052,132 - -1.3 3,052,132 - -1.5 3,052,132 - -0.3 3,052,132 - +0.7 3,052,133 + +0.4 3,052,133 + -0.8 3,052,133 + -0.2 3,052,133 + -0.5 3,052,134 - +0.1 3,052,140 + -0.0 3,052,248 - SMc04047 0.14 +0.1 3,052,248 - SMc04047 0.14 -1.0 3,052,337 + SMc04047 0.34 +1.5 3,052,337 + SMc04047 0.34 +0.9 3,052,337 + SMc04047 0.34 +0.4 3,052,337 + SMc04047 0.34 -0.8 3,052,338 - SMc04047 0.34 +0.4 3,052,338 - SMc04047 0.34 -0.5 3,052,343 + SMc04047 0.35 +0.8 3,052,343 + SMc04047 0.35 +1.0 3,052,343 + SMc04047 0.35 -0.6 3,052,344 - SMc04047 0.36 -0.8 3,052,560 - SMc04047 0.84 +0.1 3,052,560 - SMc04047 0.84 +0.2 3,052,633 - -0.6 3,052,633 - -1.0 3,052,707 + -1.0 3,052,787 - SMc04048 0.32 -1.1 3,052,864 + SMc04048 0.55 +0.1 3,052,864 + SMc04048 0.55 +0.0 3,052,865 - SMc04048 0.55 +0.2 3,052,865 - SMc04048 0.55 -1.0 3,052,970 + SMc04048 0.86 -0.2 3,052,971 - SMc04048 0.86 -0.6 3,052,971 - SMc04048 0.86 -0.5 3,052,971 - SMc04048 0.86 -0.5 3,053,036 + -1.1 3,053,214 + SMc04049 0.10 -0.1 3,053,214 + SMc04049 0.10 +0.2 3,053,214 + SMc04049 0.10 -0.0 3,053,330 + SMc04049 0.20 +0.1 3,053,331 - SMc04049 0.20 +0.5 3,053,490 + SMc04049 0.33 -1.3 3,053,550 + SMc04049 0.38 -0.6 3,053,551 - SMc04049 0.38 +0.2 3,053,554 + SMc04049 0.39 -0.2 3,053,554 + SMc04049 0.39 -1.2 3,053,554 + SMc04049 0.39 -0.2 3,053,557 + SMc04049 0.39 -0.3 3,053,558 - SMc04049 0.39 -0.4 3,053,889 + SMc04049 0.67 -0.8 3,053,889 + SMc04049 0.67 -0.1 3,053,890 - SMc04049 0.67 +0.3 3,053,918 + SMc04049 0.69 -1.4 3,053,918 + SMc04049 0.69 +0.1 3,053,984 + SMc04049 0.74 +0.1 3,053,985 - SMc04049 0.75 +0.2 3,053,985 - SMc04049 0.75 -1.7 3,053,985 - SMc04049 0.75 +0.2 3,053,993 + SMc04049 0.75 -0.8 3,053,994 - SMc04049 0.75 +0.1
Or see this region's nucleotide sequence