Strain Fitness in Sinorhizobium meliloti 1021 around SMc04048

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04047 and SMc04048 are separated by 46 nucleotidesSMc04048 and SMc04049 are separated by 72 nucleotides SMc04047: SMc04047 - pseudoazurin (blue copper protein), at 3,052,186 to 3,052,629 SMc04047 SMc04048: SMc04048 - cytochrome c protein, at 3,052,676 to 3,053,017 SMc04048 SMc04049: SMc04049 - sulfite oxidase, at 3,053,090 to 3,054,289 SMc04049 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -1 0 1at 3051.695 kb on + strandat 3051.695 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.704 kb on + strandat 3051.821 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.823 kb on - strandat 3051.985 kb on - strandat 3051.985 kb on - strandat 3052.072 kb on - strandat 3052.072 kb on - strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.127 kb on + strandat 3052.128 kb on - strandat 3052.128 kb on - strandat 3052.128 kb on - strandat 3052.128 kb on - strandat 3052.128 kb on - strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.131 kb on + strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.132 kb on - strandat 3052.133 kb on + strandat 3052.133 kb on + strandat 3052.133 kb on + strandat 3052.133 kb on + strandat 3052.134 kb on - strandat 3052.140 kb on + strandat 3052.248 kb on - strand, within SMc04047at 3052.248 kb on - strand, within SMc04047at 3052.337 kb on + strand, within SMc04047at 3052.337 kb on + strand, within SMc04047at 3052.337 kb on + strand, within SMc04047at 3052.337 kb on + strand, within SMc04047at 3052.338 kb on - strand, within SMc04047at 3052.338 kb on - strand, within SMc04047at 3052.343 kb on + strand, within SMc04047at 3052.343 kb on + strand, within SMc04047at 3052.343 kb on + strand, within SMc04047at 3052.344 kb on - strand, within SMc04047at 3052.560 kb on - strand, within SMc04047at 3052.560 kb on - strand, within SMc04047at 3052.633 kb on - strandat 3052.633 kb on - strandat 3052.707 kb on + strandat 3052.787 kb on - strand, within SMc04048at 3052.864 kb on + strand, within SMc04048at 3052.864 kb on + strand, within SMc04048at 3052.865 kb on - strand, within SMc04048at 3052.865 kb on - strand, within SMc04048at 3052.970 kb on + strand, within SMc04048at 3052.971 kb on - strand, within SMc04048at 3052.971 kb on - strand, within SMc04048at 3052.971 kb on - strand, within SMc04048at 3053.036 kb on + strandat 3053.214 kb on + strand, within SMc04049at 3053.214 kb on + strand, within SMc04049at 3053.214 kb on + strand, within SMc04049at 3053.330 kb on + strand, within SMc04049at 3053.331 kb on - strand, within SMc04049at 3053.490 kb on + strand, within SMc04049at 3053.550 kb on + strand, within SMc04049at 3053.551 kb on - strand, within SMc04049at 3053.554 kb on + strand, within SMc04049at 3053.554 kb on + strand, within SMc04049at 3053.554 kb on + strand, within SMc04049at 3053.557 kb on + strand, within SMc04049at 3053.558 kb on - strand, within SMc04049at 3053.889 kb on + strand, within SMc04049at 3053.889 kb on + strand, within SMc04049at 3053.890 kb on - strand, within SMc04049at 3053.918 kb on + strand, within SMc04049at 3053.918 kb on + strand, within SMc04049at 3053.984 kb on + strand, within SMc04049at 3053.985 kb on - strand, within SMc04049at 3053.985 kb on - strand, within SMc04049at 3053.985 kb on - strand, within SMc04049at 3053.993 kb on + strand, within SMc04049at 3053.994 kb on - strand, within SMc04049

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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3,051,695 + -0.5
3,051,695 + -0.3
3,051,704 + +0.5
3,051,704 + +0.6
3,051,704 + -0.4
3,051,704 + -0.5
3,051,821 - +0.9
3,051,823 - -0.1
3,051,823 - +0.8
3,051,823 - +0.1
3,051,823 - -0.1
3,051,823 - +1.3
3,051,823 - +1.5
3,051,823 - +0.4
3,051,823 - -0.8
3,051,823 - +0.7
3,051,823 - +0.4
3,051,985 - -0.9
3,051,985 - +0.3
3,052,072 - +0.3
3,052,072 - -0.3
3,052,127 + +0.1
3,052,127 + -0.0
3,052,127 + -0.1
3,052,127 + +0.0
3,052,127 + -1.3
3,052,127 + +0.1
3,052,127 + +0.8
3,052,128 - +0.8
3,052,128 - -1.2
3,052,128 - +0.3
3,052,128 - -0.4
3,052,128 - +0.2
3,052,131 + +0.1
3,052,131 + +1.0
3,052,131 + -0.3
3,052,131 + -0.4
3,052,131 + -0.1
3,052,131 + +0.1
3,052,131 + -1.3
3,052,131 + -0.4
3,052,131 + +0.1
3,052,132 - +0.4
3,052,132 - +0.4
3,052,132 - -0.9
3,052,132 - +0.1
3,052,132 - -0.1
3,052,132 - -0.2
3,052,132 - -1.3
3,052,132 - -1.5
3,052,132 - -0.3
3,052,132 - +0.7
3,052,133 + +0.4
3,052,133 + -0.8
3,052,133 + -0.2
3,052,133 + -0.5
3,052,134 - +0.1
3,052,140 + -0.0
3,052,248 - SMc04047 0.14 +0.1
3,052,248 - SMc04047 0.14 -1.0
3,052,337 + SMc04047 0.34 +1.5
3,052,337 + SMc04047 0.34 +0.9
3,052,337 + SMc04047 0.34 +0.4
3,052,337 + SMc04047 0.34 -0.8
3,052,338 - SMc04047 0.34 +0.4
3,052,338 - SMc04047 0.34 -0.5
3,052,343 + SMc04047 0.35 +0.8
3,052,343 + SMc04047 0.35 +1.0
3,052,343 + SMc04047 0.35 -0.6
3,052,344 - SMc04047 0.36 -0.8
3,052,560 - SMc04047 0.84 +0.1
3,052,560 - SMc04047 0.84 +0.2
3,052,633 - -0.6
3,052,633 - -1.0
3,052,707 + -1.0
3,052,787 - SMc04048 0.32 -1.1
3,052,864 + SMc04048 0.55 +0.1
3,052,864 + SMc04048 0.55 +0.0
3,052,865 - SMc04048 0.55 +0.2
3,052,865 - SMc04048 0.55 -1.0
3,052,970 + SMc04048 0.86 -0.2
3,052,971 - SMc04048 0.86 -0.6
3,052,971 - SMc04048 0.86 -0.5
3,052,971 - SMc04048 0.86 -0.5
3,053,036 + -1.1
3,053,214 + SMc04049 0.10 -0.1
3,053,214 + SMc04049 0.10 +0.2
3,053,214 + SMc04049 0.10 -0.0
3,053,330 + SMc04049 0.20 +0.1
3,053,331 - SMc04049 0.20 +0.5
3,053,490 + SMc04049 0.33 -1.3
3,053,550 + SMc04049 0.38 -0.6
3,053,551 - SMc04049 0.38 +0.2
3,053,554 + SMc04049 0.39 -0.2
3,053,554 + SMc04049 0.39 -1.2
3,053,554 + SMc04049 0.39 -0.2
3,053,557 + SMc04049 0.39 -0.3
3,053,558 - SMc04049 0.39 -0.4
3,053,889 + SMc04049 0.67 -0.8
3,053,889 + SMc04049 0.67 -0.1
3,053,890 - SMc04049 0.67 +0.3
3,053,918 + SMc04049 0.69 -1.4
3,053,918 + SMc04049 0.69 +0.1
3,053,984 + SMc04049 0.74 +0.1
3,053,985 - SMc04049 0.75 +0.2
3,053,985 - SMc04049 0.75 -1.7
3,053,985 - SMc04049 0.75 +0.2
3,053,993 + SMc04049 0.75 -0.8
3,053,994 - SMc04049 0.75 +0.1

Or see this region's nucleotide sequence