Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0067 and SMa0070 are separated by 185 nucleotides SMa0070 and SMa0072 overlap by 4 nucleotides SMa0072 and SMa0074 are separated by 7 nucleotides
SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167
SMa0067
SMa0070: SMa0070 - ABC transporter permease, at 37,353 to 38,336
SMa0070
SMa0072: SMa0072 - ABC transporter ATP-binding protein, at 38,333 to 39,064
SMa0072
SMa0074: SMa0074 - 3-ketoacyl-ACP reductase, at 39,072 to 39,830
SMa0074
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 36.481 kb on + strand, within SMa0067 at 36.574 kb on - strand, within SMa0067 at 36.731 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.742 kb on + strand, within SMa0067 at 36.743 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 36.992 kb on - strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.021 kb on + strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.022 kb on - strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.054 kb on + strand, within SMa0067 at 37.055 kb on - strand, within SMa0067 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.686 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.827 kb on + strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 37.828 kb on - strand, within SMa0070 at 38.377 kb on + strand at 38.377 kb on + strand at 38.377 kb on + strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.378 kb on - strand at 38.538 kb on + strand, within SMa0072 at 38.538 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.588 kb on + strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.589 kb on - strand, within SMa0072 at 38.594 kb on + strand, within SMa0072 at 38.595 kb on - strand, within SMa0072 at 39.255 kb on + strand, within SMa0074 at 39.255 kb on + strand, within SMa0074 at 39.256 kb on - strand, within SMa0074 at 39.276 kb on - strand, within SMa0074 at 39.280 kb on + strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.281 kb on - strand, within SMa0074 at 39.305 kb on + strand, within SMa0074
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 36,481 + SMa0067 0.29 -0.8 36,574 - SMa0067 0.38 +0.1 36,731 + SMa0067 0.55 -0.7 36,742 + SMa0067 0.56 -0.5 36,742 + SMa0067 0.56 -0.0 36,743 - SMa0067 0.56 -0.6 36,992 - SMa0067 0.82 +0.6 36,992 - SMa0067 0.82 +0.2 36,992 - SMa0067 0.82 +0.1 37,021 + SMa0067 0.85 -1.8 37,021 + SMa0067 0.85 -0.3 37,021 + SMa0067 0.85 -0.9 37,021 + SMa0067 0.85 +1.3 37,022 - SMa0067 0.85 +0.4 37,022 - SMa0067 0.85 -0.9 37,054 + SMa0067 0.88 +0.7 37,054 + SMa0067 0.88 -0.6 37,055 - SMa0067 0.88 +0.1 37,686 + SMa0070 0.34 -1.6 37,686 + SMa0070 0.34 -0.4 37,686 + SMa0070 0.34 -0.1 37,686 + SMa0070 0.34 +0.1 37,827 + SMa0070 0.48 +0.1 37,827 + SMa0070 0.48 -0.7 37,827 + SMa0070 0.48 -0.6 37,828 - SMa0070 0.48 +0.3 37,828 - SMa0070 0.48 -0.2 37,828 - SMa0070 0.48 -0.6 38,377 + -1.0 38,377 + +0.0 38,377 + -0.1 38,378 - +0.9 38,378 - -0.3 38,378 - +0.2 38,378 - +0.7 38,538 + SMa0072 0.28 +0.3 38,538 + SMa0072 0.28 -0.4 38,588 + SMa0072 0.35 +0.6 38,588 + SMa0072 0.35 +0.4 38,589 - SMa0072 0.35 -0.3 38,589 - SMa0072 0.35 -0.2 38,589 - SMa0072 0.35 +0.7 38,594 + SMa0072 0.36 -0.5 38,595 - SMa0072 0.36 -0.4 39,255 + SMa0074 0.24 -0.0 39,255 + SMa0074 0.24 -0.2 39,256 - SMa0074 0.24 -0.3 39,276 - SMa0074 0.27 +0.3 39,280 + SMa0074 0.27 -0.6 39,281 - SMa0074 0.28 +0.4 39,281 - SMa0074 0.28 -0.3 39,305 + SMa0074 0.31 +0.6
Or see this region's nucleotide sequence