Experiment: Methyl beta-D-glucopyranoside (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20992 and SM_b21674 are separated by 32 nucleotides SM_b21674 and SM_b20993 are separated by 287 nucleotides
SM_b20992: SM_b20992 - hypothetical protein, at 1,226,845 to 1,228,248
_b20992
SM_b21674: SM_b21674 - hypothetical protein, at 1,228,281 to 1,228,526
_b21674
SM_b20993: SM_b20993 - FMNH2-dependent monooxygenase, at 1,228,814 to 1,230,025
_b20993
Position (kb)
1228
1229 Strain fitness (log2 ratio)
-2
-1
0
1 at 1227.299 kb on + strand, within SM_b20992 at 1227.299 kb on + strand, within SM_b20992 at 1227.516 kb on + strand, within SM_b20992 at 1227.666 kb on + strand, within SM_b20992 at 1227.882 kb on - strand, within SM_b20992 at 1228.097 kb on + strand, within SM_b20992 at 1228.298 kb on + strand at 1228.298 kb on + strand at 1228.299 kb on - strand at 1228.349 kb on - strand, within SM_b21674 at 1228.350 kb on + strand, within SM_b21674 at 1228.450 kb on - strand, within SM_b21674 at 1228.503 kb on - strand at 1228.525 kb on - strand at 1228.525 kb on - strand at 1228.552 kb on - strand at 1228.552 kb on - strand at 1228.552 kb on - strand at 1228.595 kb on + strand at 1228.595 kb on + strand at 1228.621 kb on + strand at 1228.663 kb on + strand at 1228.761 kb on + strand at 1228.762 kb on - strand at 1228.775 kb on + strand at 1228.775 kb on + strand at 1228.775 kb on + strand at 1228.776 kb on - strand at 1228.776 kb on - strand at 1228.778 kb on + strand at 1228.778 kb on + strand at 1228.778 kb on + strand at 1228.778 kb on + strand at 1228.778 kb on + strand at 1228.779 kb on - strand at 1228.779 kb on - strand at 1229.037 kb on + strand, within SM_b20993 at 1229.037 kb on + strand, within SM_b20993 at 1229.120 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.303 kb on + strand, within SM_b20993 at 1229.304 kb on - strand, within SM_b20993 at 1229.304 kb on - strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.308 kb on + strand, within SM_b20993 at 1229.309 kb on - strand, within SM_b20993
Per-strain Table
Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C) remove 1,227,299 + SM_b20992 0.32 +0.4 1,227,299 + SM_b20992 0.32 -0.5 1,227,516 + SM_b20992 0.48 -0.2 1,227,666 + SM_b20992 0.58 +0.2 1,227,882 - SM_b20992 0.74 +1.2 1,228,097 + SM_b20992 0.89 +1.0 1,228,298 + -0.5 1,228,298 + +0.0 1,228,299 - +0.1 1,228,349 - SM_b21674 0.28 -0.8 1,228,350 + SM_b21674 0.28 -0.1 1,228,450 - SM_b21674 0.69 -0.7 1,228,503 - -0.9 1,228,525 - -1.2 1,228,525 - +0.3 1,228,552 - -0.4 1,228,552 - -0.6 1,228,552 - -2.3 1,228,595 + -0.3 1,228,595 + +0.8 1,228,621 + +0.4 1,228,663 + -0.7 1,228,761 + -0.0 1,228,762 - -1.3 1,228,775 + +1.0 1,228,775 + -0.6 1,228,775 + -0.6 1,228,776 - +0.7 1,228,776 - -0.6 1,228,778 + +0.2 1,228,778 + +0.1 1,228,778 + -0.4 1,228,778 + -0.3 1,228,778 + -0.1 1,228,779 - -1.1 1,228,779 - -1.0 1,229,037 + SM_b20993 0.18 -2.1 1,229,037 + SM_b20993 0.18 +0.6 1,229,120 + SM_b20993 0.25 -0.1 1,229,303 + SM_b20993 0.40 +0.6 1,229,303 + SM_b20993 0.40 +0.4 1,229,303 + SM_b20993 0.40 -0.5 1,229,303 + SM_b20993 0.40 +0.7 1,229,303 + SM_b20993 0.40 -0.2 1,229,304 - SM_b20993 0.40 -0.7 1,229,304 - SM_b20993 0.40 -0.5 1,229,308 + SM_b20993 0.41 -1.0 1,229,308 + SM_b20993 0.41 +0.7 1,229,308 + SM_b20993 0.41 +0.9 1,229,309 - SM_b20993 0.41 -0.5
Or see this region's nucleotide sequence