Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21171

Experiment: Methyl beta-D-glucopyranoside (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21169 and SM_b21170 are separated by 19 nucleotidesSM_b21170 and SM_b21171 overlap by 4 nucleotidesSM_b21171 and SM_b21172 overlap by 35 nucleotidesSM_b21172 and SM_b21173 are separated by 79 nucleotides SM_b21169: SM_b21169 - ArsR family transcriptional regulator, at 916,402 to 916,827 _b21169 SM_b21170: SM_b21170 - guanylate kinase, at 916,847 to 917,434 _b21170 SM_b21171: SM_b21171 - enzyme protein, at 917,431 to 918,570 _b21171 SM_b21172: SM_b21172 - hypothetical protein, at 918,536 to 919,345 _b21172 SM_b21173: SM_b21173 - hypothetical protein, at 919,425 to 919,616 _b21173 Position (kb) 917 918 919Strain fitness (log2 ratio) -2 -1 0 1 2at 916.442 kb on + strandat 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.505 kb on + strand, within SM_b21169at 916.506 kb on - strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.614 kb on + strand, within SM_b21169at 916.615 kb on - strand, within SM_b21169at 916.621 kb on + strand, within SM_b21169at 916.621 kb on + strand, within SM_b21169at 916.622 kb on - strandat 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strandat 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.622 kb on - strand, within SM_b21169at 916.659 kb on + strand, within SM_b21169at 916.660 kb on - strand, within SM_b21169at 916.660 kb on - strand, within SM_b21169at 916.743 kb on + strand, within SM_b21169at 916.867 kb on + strandat 916.867 kb on + strandat 917.081 kb on - strand, within SM_b21170at 917.127 kb on - strand, within SM_b21170at 917.181 kb on + strand, within SM_b21170at 917.182 kb on - strand, within SM_b21170at 917.182 kb on - strand, within SM_b21170at 917.476 kb on + strandat 917.477 kb on - strandat 917.660 kb on + strand, within SM_b21171at 917.745 kb on + strand, within SM_b21171at 917.945 kb on + strand, within SM_b21171at 917.945 kb on + strand, within SM_b21171at 918.021 kb on - strand, within SM_b21171at 918.024 kb on - strand, within SM_b21171at 918.033 kb on - strand, within SM_b21171at 918.033 kb on - strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.122 kb on + strand, within SM_b21171at 918.428 kb on + strand, within SM_b21171at 918.429 kb on - strand, within SM_b21171at 918.760 kb on + strand, within SM_b21172at 918.761 kb on - strand, within SM_b21172at 918.795 kb on + strand, within SM_b21172at 918.796 kb on - strand, within SM_b21172at 918.802 kb on - strand, within SM_b21172at 918.996 kb on + strand, within SM_b21172at 919.157 kb on + strand, within SM_b21172at 919.157 kb on + strand, within SM_b21172at 919.272 kb on + strandat 919.501 kb on + strand, within SM_b21173at 919.502 kb on - strand, within SM_b21173at 919.517 kb on + strand, within SM_b21173

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Per-strain Table

Position Strand Gene LocusTag Fraction Methyl beta-D-glucopyranoside (C)
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916,442 + +0.0
916,505 + SM_b21169 0.24 -0.7
916,505 + SM_b21169 0.24 -0.5
916,505 + SM_b21169 0.24 +0.2
916,505 + SM_b21169 0.24 -0.1
916,506 - SM_b21169 0.24 -0.5
916,614 + SM_b21169 0.50 -1.8
916,614 + SM_b21169 0.50 +0.0
916,614 + SM_b21169 0.50 -0.7
916,615 - SM_b21169 0.50 -0.3
916,621 + SM_b21169 0.51 +0.3
916,621 + SM_b21169 0.51 +0.7
916,622 - +1.2
916,622 - SM_b21169 0.52 -1.2
916,622 - SM_b21169 0.52 +1.4
916,622 - +2.0
916,622 - SM_b21169 0.52 -0.4
916,622 - SM_b21169 0.52 -0.2
916,622 - SM_b21169 0.52 -0.1
916,659 + SM_b21169 0.60 -0.1
916,660 - SM_b21169 0.61 +0.4
916,660 - SM_b21169 0.61 +0.7
916,743 + SM_b21169 0.80 +1.2
916,867 + +0.3
916,867 + -1.9
917,081 - SM_b21170 0.40 -0.5
917,127 - SM_b21170 0.48 +0.2
917,181 + SM_b21170 0.57 +0.8
917,182 - SM_b21170 0.57 -1.0
917,182 - SM_b21170 0.57 +0.3
917,476 + -0.4
917,477 - -1.6
917,660 + SM_b21171 0.20 -2.2
917,745 + SM_b21171 0.28 -0.2
917,945 + SM_b21171 0.45 +2.0
917,945 + SM_b21171 0.45 -1.0
918,021 - SM_b21171 0.52 -0.2
918,024 - SM_b21171 0.52 -0.5
918,033 - SM_b21171 0.53 +0.3
918,033 - SM_b21171 0.53 -0.3
918,122 + SM_b21171 0.61 -0.8
918,122 + SM_b21171 0.61 -0.9
918,122 + SM_b21171 0.61 -0.8
918,428 + SM_b21171 0.87 -0.0
918,429 - SM_b21171 0.88 -0.9
918,760 + SM_b21172 0.28 -0.1
918,761 - SM_b21172 0.28 -0.1
918,795 + SM_b21172 0.32 -0.4
918,796 - SM_b21172 0.32 +0.6
918,802 - SM_b21172 0.33 +0.0
918,996 + SM_b21172 0.57 -0.1
919,157 + SM_b21172 0.77 -0.4
919,157 + SM_b21172 0.77 -0.4
919,272 + -0.7
919,501 + SM_b21173 0.40 -1.0
919,502 - SM_b21173 0.40 +0.3
919,517 + SM_b21173 0.48 -0.2

Or see this region's nucleotide sequence