Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14370

Experiment: 4-Hydroxyphenylpropionic (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 5 mM
3,221,484	+		PFLU_RS31620	0.57	+0.1
3,221,484	+		PFLU_RS31620	0.57	+0.5
3,221,484	+		PFLU_RS31620	0.57	+0.1
3,221,484	+		PFLU_RS31620	0.57	+1.3
3,221,484	+		PFLU_RS31620	0.57	+0.7
3,221,485	-		PFLU_RS31620	0.59	+0.3
3,221,485	-		PFLU_RS31620	0.59	+0.3
3,221,485	-		PFLU_RS31620	0.59	+0.7
3,221,485	-		PFLU_RS31620	0.59	-0.1
3,221,485	-		PFLU_RS31620	0.59	-0.8
3,221,485	-		PFLU_RS31620	0.59	-1.5
3,221,485	-		PFLU_RS31620	0.59	+0.3
3,221,509	+				-0.3
3,221,509	+				+0.2
3,221,509	+				-0.2
3,221,510	-				+0.6
3,221,510	-				-0.5
3,221,510	-				+1.5
3,221,555	+				+0.2
3,221,555	+				-0.4
3,221,556	-				+1.3
3,221,556	-				-1.3
3,221,556	-				-0.1
3,221,556	-				+0.7
3,221,561	+				+3.3
3,221,562	-				-0.6
3,221,645	-				+1.3
3,221,645	-				+1.6
3,221,648	+				+0.1
3,221,648	+				+0.3
3,221,649	-				+2.9
3,221,649	-				-0.6
3,221,649	-				-0.1
3,221,673	+				+1.3
3,221,673	+				+0.5
3,221,674	-				+0.1
3,221,674	-				-1.7
3,221,686	+				+2.3
3,221,709	-				+0.1
3,221,965	+		PFLU_RS14365	0.50	-0.4
3,221,965	+		PFLU_RS14365	0.50	+0.9
3,221,966	-		PFLU_RS14365	0.51	+0.9
3,221,996	-		PFLU_RS14365	0.57	-0.7
3,221,996	-		PFLU_RS14365	0.57	-1.5
3,222,001	+		PFLU_RS14365	0.58	+0.5
3,222,002	-		PFLU_RS14365	0.58	-0.1
3,222,002	-		PFLU_RS14365	0.58	-1.1
3,222,033	+		PFLU_RS14365	0.64	-0.3
3,222,033	+		PFLU_RS14365	0.64	-0.5
3,222,033	+		PFLU_RS14365	0.64	+0.6
3,222,034	-		PFLU_RS14365	0.64	-0.3
3,222,034	-		PFLU_RS14365	0.64	-2.9
3,222,034	-		PFLU_RS14365	0.64	-2.3
3,222,079	-		PFLU_RS14365	0.73	+0.1
3,222,125	+		PFLU_RS14365	0.82	+0.4
3,222,125	+		PFLU_RS14365	0.82	+1.7
3,222,126	-		PFLU_RS14365	0.82	+0.3
3,222,126	-		PFLU_RS14365	0.82	+0.8
3,222,126	-		PFLU_RS14365	0.82	+0.2
3,222,126	-		PFLU_RS14365	0.82	+2.3
3,222,140	+		PFLU_RS14365	0.85	+2.3
3,222,175	+				+2.9
3,222,199	+				-0.7
3,222,199	+				-1.0
3,222,199	+				-2.7
3,222,200	-				+0.7
3,222,224	+				-0.7
3,222,225	-				+1.3
3,222,260	-				+0.6
3,222,365	-				-0.7
3,222,386	+				+0.8
3,222,386	+				+0.6
3,222,386	+				-0.3
3,222,387	-				-2.1
3,222,433	-		PFLU_RS14370	0.15	+1.1
3,222,449	+		PFLU_RS14370	0.23	+1.0
3,222,449	+		PFLU_RS14370	0.23	+0.3
3,222,449	+		PFLU_RS14370	0.23	-0.3
3,222,450	-		PFLU_RS14370	0.24	-0.7
3,222,450	-		PFLU_RS14370	0.24	-0.5
3,222,450	-		PFLU_RS14370	0.24	+0.1
3,222,450	-		PFLU_RS14370	0.24	-0.8
3,222,575	+		PFLU_RS14370	0.87	-1.1
3,222,927	+				-2.3
3,222,948	+				+1.2
3,222,948	+				-0.3
3,222,948	+				+0.2
3,222,948	+				-0.5
3,222,948	+				-1.1
3,222,949	-				-0.1
3,222,949	-				+2.1
3,222,949	-				-1.0
3,222,960	+				-1.0
3,222,960	+				+1.5
3,222,960	+				+0.8
3,222,960	+				-0.3
3,222,960	+				-2.8
3,222,961	-				+0.3
3,222,961	-				-1.0
3,222,961	-				-0.7
3,222,961	-				-0.3
3,222,974	+				-0.4
3,222,974	+				+0.6
3,222,974	+				-2.4
3,222,998	+				-1.1
3,222,999	-				-1.1
3,222,999	-				-0.9
3,223,041	-				-0.7
3,223,043	+				-0.6
3,223,043	+				-2.0
3,223,043	+				-0.4
3,223,043	+				+0.4
3,223,043	+				-1.0
3,223,043	+				-0.1
3,223,043	+				-0.3
3,223,043	+				-0.4
3,223,043	+				+1.0
3,223,044	-				+0.6
3,223,044	-				+1.1
3,223,044	-				+0.3
3,223,044	-				+0.8
3,223,044	-				-0.2
3,223,044	-				-0.8
3,223,044	-				-0.3
3,223,044	-				-0.0
3,223,044	-				-0.1
3,223,044	-				-1.0
3,223,044	-				+2.9
3,223,044	-				+0.3
3,223,072	+				+2.1
3,223,072	+				-1.5
3,223,072	+				+1.3
3,223,072	+				-1.0
3,223,072	+				-0.7
3,223,072	+				+0.8
3,223,072	+				-1.3
3,223,073	-				+0.7
3,223,073	-				-0.7
3,223,169	+				+0.6
3,223,169	+				-1.7
3,223,169	+				+0.9
3,223,170	-				-0.7
3,223,170	-				+1.2
3,223,197	+				-1.3
3,223,198	-				+2.3
3,223,198	-				-1.8
3,223,198	-				+1.7
3,223,201	+				+2.7
3,223,201	+				-0.3
3,223,201	+				-2.1
3,223,201	+				-0.0
3,223,202	-				-0.5
3,223,202	-				-0.4
3,223,202	-				-0.4
3,223,202	-				-0.1
3,223,202	-				-1.3
3,223,243	+				-1.3
3,223,243	+				+0.2
3,223,243	+				+1.2
3,223,244	-				-1.0
3,223,244	-				+3.6
3,223,244	-				-2.1
3,223,252	+				+0.9
3,223,252	+				+0.0
3,223,253	-				-1.3
3,223,253	-				+0.8
3,223,253	-				-0.5
3,223,253	-				+1.2
3,223,274	+				-1.1
3,223,275	-				-0.7
3,223,302	+				-0.0
3,223,302	+				-0.8
3,223,303	-				-0.0
3,223,339	+				+0.5
3,223,339	+				+0.6
3,223,406	+				-0.3
3,223,406	+				+0.5
3,223,406	+				+0.1
3,223,406	+				+0.4
3,223,406	+				+0.2
3,223,406	+				-1.0
3,223,406	+				+1.0
3,223,406	+				-1.5
3,223,406	+				-0.4
3,223,407	-				+1.6
3,223,407	-				+0.3
3,223,407	-				+0.4
3,223,407	-				+0.8
3,223,407	-				+0.5
3,223,407	-				-0.0
3,223,407	-				-0.5
3,223,407	-				+1.9
3,223,407	-				-0.4
3,223,407	-				-1.5
3,223,407	-				-0.1
3,223,445	-				+1.3
3,223,549	+		PFLU_RS14380	0.18	-1.0
3,223,550	-		PFLU_RS14380	0.18	+1.0
3,223,550	-		PFLU_RS14380	0.18	+2.5
3,223,550	-		PFLU_RS14380	0.18	-0.1
3,223,550	-		PFLU_RS14380	0.18	+1.3
3,223,561	+		PFLU_RS14380	0.21	+0.1