Experiment: Post-colonization (Day 10) - Cage3;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0616 and BT0617 are separated by 6 nucleotides BT0617 and BT0618 are separated by 24 nucleotides BT0618 and BT0619 are separated by 6 nucleotides
BT0616: BT0616 - conserved hypothetical protein (NCBI ptt file), at 761,757 to 762,182
BT0616
BT0617: BT0617 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file), at 762,189 to 763,070
BT0617
BT0618: BT0618 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file), at 763,095 to 764,432
BT0618
BT0619: BT0619 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file), at 764,439 to 765,431
BT0619
Position (kb) 763
764
765 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 762.116 kb on - strand, within BT0616 at 762.228 kb on - strand at 762.497 kb on - strand, within BT0617 at 762.583 kb on - strand, within BT0617 at 762.708 kb on - strand, within BT0617 at 762.790 kb on - strand, within BT0617 at 763.161 kb on - strand at 763.603 kb on - strand, within BT0618 at 763.654 kb on + strand, within BT0618 at 763.688 kb on - strand, within BT0618 at 764.248 kb on - strand, within BT0618 at 764.396 kb on - strand at 764.459 kb on - strand at 764.465 kb on - strand at 764.509 kb on - strand at 764.831 kb on - strand, within BT0619 at 764.896 kb on - strand, within BT0619
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage3;Mouse1 remove 762,116 - BT0616 0.84 +0.1 762,228 - -1.7 762,497 - BT0617 0.35 -2.8 762,583 - BT0617 0.45 -1.7 762,708 - BT0617 0.59 -1.4 762,790 - BT0617 0.68 -1.6 763,161 - -0.1 763,603 - BT0618 0.38 +0.9 763,654 + BT0618 0.42 -2.3 763,688 - BT0618 0.44 -1.4 764,248 - BT0618 0.86 -1.4 764,396 - -1.4 764,459 - -3.3 764,465 - -1.9 764,509 - -1.4 764,831 - BT0619 0.39 -2.9 764,896 - BT0619 0.46 -1.4
Or see this region's nucleotide sequence