Experiment: p-Coumaric (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04070 and PFLU_RS04075 are separated by 259 nucleotides PFLU_RS04075 and PFLU_RS04080 are separated by 98 nucleotides PFLU_RS04080 and PFLU_RS04085 are separated by 225 nucleotides
PFLU_RS04070: PFLU_RS04070 - peptide chain release factor 3, at 922,396 to 923,979
_RS04070
PFLU_RS04075: PFLU_RS04075 - hypothetical protein, at 924,239 to 924,484
_RS04075
PFLU_RS04080: PFLU_RS04080 - hypothetical protein, at 924,583 to 924,846
_RS04080
PFLU_RS04085: PFLU_RS04085 - ABC transporter ATP-binding protein, at 925,072 to 926,043
_RS04085
Position (kb) 924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 923.755 kb on + strand, within PFLU_RS04070 at 923.756 kb on - strand, within PFLU_RS04070 at 923.756 kb on - strand, within PFLU_RS04070 at 923.756 kb on - strand, within PFLU_RS04070 at 923.756 kb on - strand, within PFLU_RS04070 at 923.773 kb on + strand, within PFLU_RS04070 at 923.773 kb on + strand, within PFLU_RS04070 at 923.774 kb on - strand, within PFLU_RS04070 at 923.774 kb on - strand, within PFLU_RS04070 at 923.774 kb on - strand, within PFLU_RS04070 at 923.791 kb on + strand, within PFLU_RS04070 at 923.893 kb on + strand at 923.894 kb on - strand at 923.977 kb on + strand at 923.977 kb on + strand at 923.978 kb on - strand at 924.076 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.084 kb on + strand at 924.094 kb on + strand at 924.094 kb on + strand at 924.094 kb on + strand at 924.111 kb on - strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.180 kb on + strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.181 kb on - strand at 924.191 kb on + strand at 924.191 kb on + strand at 924.203 kb on + strand at 924.204 kb on - strand at 924.204 kb on - strand at 924.212 kb on + strand at 924.212 kb on + strand at 924.213 kb on - strand at 924.213 kb on - strand at 924.227 kb on + strand at 924.227 kb on + strand at 924.227 kb on + strand at 924.228 kb on - strand at 924.228 kb on - strand at 924.228 kb on - strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.244 kb on + strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.245 kb on - strand at 924.246 kb on + strand at 924.246 kb on + strand at 924.246 kb on + strand at 924.246 kb on + strand at 924.247 kb on - strand at 924.247 kb on - strand at 924.247 kb on - strand at 924.247 kb on - strand at 924.247 kb on - strand at 924.438 kb on - strand, within PFLU_RS04075 at 924.438 kb on - strand, within PFLU_RS04075 at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.464 kb on + strand at 924.465 kb on - strand at 924.465 kb on - strand at 924.465 kb on - strand at 924.465 kb on - strand at 924.465 kb on - strand at 924.465 kb on - strand at 924.485 kb on + strand at 924.485 kb on + strand at 924.486 kb on - strand at 924.486 kb on - strand at 924.486 kb on - strand at 924.503 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.512 kb on + strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.513 kb on - strand at 924.560 kb on + strand at 924.560 kb on + strand at 924.560 kb on + strand at 924.561 kb on - strand at 924.561 kb on - strand at 924.561 kb on - strand at 924.561 kb on - strand at 924.588 kb on + strand at 924.589 kb on - strand at 924.589 kb on - strand at 924.614 kb on + strand, within PFLU_RS04080 at 924.614 kb on + strand, within PFLU_RS04080 at 924.614 kb on + strand, within PFLU_RS04080 at 924.615 kb on - strand, within PFLU_RS04080 at 924.615 kb on - strand, within PFLU_RS04080 at 924.642 kb on + strand, within PFLU_RS04080 at 924.642 kb on + strand, within PFLU_RS04080 at 924.642 kb on + strand, within PFLU_RS04080 at 924.642 kb on + strand, within PFLU_RS04080 at 924.643 kb on - strand, within PFLU_RS04080 at 924.643 kb on - strand, within PFLU_RS04080 at 924.643 kb on - strand, within PFLU_RS04080 at 924.643 kb on - strand, within PFLU_RS04080 at 924.663 kb on + strand, within PFLU_RS04080 at 924.663 kb on + strand, within PFLU_RS04080 at 924.663 kb on + strand, within PFLU_RS04080 at 924.663 kb on + strand, within PFLU_RS04080 at 924.664 kb on - strand, within PFLU_RS04080 at 924.664 kb on - strand, within PFLU_RS04080 at 924.664 kb on - strand, within PFLU_RS04080 at 924.844 kb on + strand at 924.844 kb on + strand at 924.844 kb on + strand at 924.845 kb on - strand at 924.845 kb on - strand at 924.845 kb on - strand at 924.845 kb on - strand at 924.845 kb on - strand at 924.927 kb on + strand at 924.928 kb on - strand at 925.008 kb on + strand at 925.009 kb on - strand at 925.073 kb on + strand at 925.073 kb on + strand at 925.073 kb on + strand at 925.074 kb on - strand at 925.074 kb on - strand at 925.116 kb on + strand at 925.166 kb on + strand at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.299 kb on - strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.319 kb on + strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.320 kb on - strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.361 kb on + strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.362 kb on - strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.424 kb on + strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.425 kb on - strand, within PFLU_RS04085 at 925.604 kb on + strand, within PFLU_RS04085 at 925.604 kb on + strand, within PFLU_RS04085 at 925.605 kb on - strand, within PFLU_RS04085 at 925.742 kb on + strand, within PFLU_RS04085 at 925.743 kb on - strand, within PFLU_RS04085 at 925.743 kb on - strand, within PFLU_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) 5 mM remove 923,755 + PFLU_RS04070 0.86 +3.4 923,756 - PFLU_RS04070 0.86 +0.4 923,756 - PFLU_RS04070 0.86 +2.4 923,756 - PFLU_RS04070 0.86 +2.4 923,756 - PFLU_RS04070 0.86 +2.4 923,773 + PFLU_RS04070 0.87 +2.4 923,773 + PFLU_RS04070 0.87 +2.4 923,774 - PFLU_RS04070 0.87 +2.4 923,774 - PFLU_RS04070 0.87 -0.2 923,774 - PFLU_RS04070 0.87 +0.8 923,791 + PFLU_RS04070 0.88 +2.4 923,893 + +2.4 923,894 - +1.4 923,977 + -0.4 923,977 + -0.7 923,978 - +1.8 924,076 + +0.3 924,084 + -1.8 924,084 + +0.1 924,084 + -1.6 924,084 + -0.6 924,084 + +0.5 924,084 + -0.8 924,084 + +0.3 924,084 + +0.8 924,084 + -0.3 924,084 + -1.2 924,094 + -0.6 924,094 + -2.2 924,094 + -0.2 924,111 - +0.7 924,180 + +1.0 924,180 + -1.2 924,180 + +1.4 924,180 + -0.3 924,180 + +0.3 924,180 + +1.4 924,180 + +0.6 924,180 + -0.3 924,180 + +0.9 924,180 + -1.4 924,180 + -1.4 924,180 + +0.8 924,180 + +0.3 924,180 + +0.9 924,180 + +0.6 924,180 + -0.8 924,180 + +0.0 924,180 + -0.1 924,181 - -0.2 924,181 - +1.4 924,181 - -0.4 924,181 - -1.2 924,181 - -0.4 924,181 - -1.6 924,181 - -0.7 924,181 - -1.0 924,181 - +0.1 924,181 - +0.5 924,181 - +1.4 924,181 - -0.6 924,181 - +0.1 924,181 - -0.4 924,181 - -1.7 924,181 - -0.6 924,181 - -1.0 924,181 - +1.4 924,191 + +1.9 924,191 + +1.1 924,203 + +2.0 924,204 - +0.3 924,204 - -0.6 924,212 + -0.2 924,212 + +1.1 924,213 - +0.4 924,213 - -1.9 924,227 + +0.5 924,227 + +0.7 924,227 + +0.2 924,228 - -2.5 924,228 - -2.7 924,228 - -0.2 924,244 + +1.6 924,244 + -1.4 924,244 + +0.8 924,244 + -1.8 924,244 + -0.4 924,244 + +0.7 924,244 + +0.4 924,244 + +0.4 924,244 + +0.2 924,244 + -0.8 924,244 + -2.6 924,244 + -0.6 924,245 - +0.4 924,245 - -0.9 924,245 - +2.4 924,245 - -0.9 924,245 - -0.3 924,245 - -0.2 924,245 - +1.1 924,245 - -0.4 924,245 - -0.6 924,245 - -0.3 924,245 - +0.7 924,245 - +0.4 924,245 - -2.5 924,245 - +2.0 924,245 - +1.2 924,245 - +0.7 924,246 + +1.1 924,246 + +0.8 924,246 + -0.9 924,246 + -0.4 924,247 - +0.2 924,247 - -0.8 924,247 - +2.0 924,247 - -0.2 924,247 - -1.1 924,438 - PFLU_RS04075 0.81 -0.6 924,438 - PFLU_RS04075 0.81 -3.2 924,464 + +0.4 924,464 + -0.9 924,464 + -1.4 924,464 + -1.3 924,464 + +1.4 924,464 + +3.4 924,464 + -1.4 924,464 + -0.2 924,464 + +0.1 924,464 + -1.0 924,464 + +0.1 924,464 + -0.7 924,464 + +0.1 924,464 + +0.2 924,465 - -0.9 924,465 - +0.2 924,465 - -1.4 924,465 - -0.6 924,465 - -0.3 924,465 - -0.7 924,485 + +0.2 924,485 + -0.6 924,486 - -3.6 924,486 - +0.6 924,486 - +2.4 924,503 + +0.1 924,512 + -1.2 924,512 + -1.0 924,512 + -1.3 924,512 + +1.6 924,512 + -0.2 924,512 + -1.0 924,512 + -1.0 924,512 + -2.0 924,512 + -0.2 924,513 - -0.5 924,513 - +3.0 924,513 - -1.5 924,513 - -1.6 924,513 - -0.6 924,513 - -0.9 924,513 - +0.6 924,513 - -0.8 924,513 - -1.6 924,513 - -0.2 924,560 + +0.5 924,560 + -1.2 924,560 + -0.5 924,561 - +2.4 924,561 - +0.8 924,561 - -3.5 924,561 - +0.6 924,588 + +0.6 924,589 - +0.5 924,589 - +1.4 924,614 + PFLU_RS04080 0.12 +1.0 924,614 + PFLU_RS04080 0.12 +0.8 924,614 + PFLU_RS04080 0.12 -1.0 924,615 - PFLU_RS04080 0.12 -1.0 924,615 - PFLU_RS04080 0.12 +0.3 924,642 + PFLU_RS04080 0.22 -0.6 924,642 + PFLU_RS04080 0.22 +0.4 924,642 + PFLU_RS04080 0.22 -0.6 924,642 + PFLU_RS04080 0.22 +1.6 924,643 - PFLU_RS04080 0.23 -2.0 924,643 - PFLU_RS04080 0.23 +1.3 924,643 - PFLU_RS04080 0.23 -1.0 924,643 - PFLU_RS04080 0.23 +1.0 924,663 + PFLU_RS04080 0.30 -2.2 924,663 + PFLU_RS04080 0.30 -1.0 924,663 + PFLU_RS04080 0.30 -0.6 924,663 + PFLU_RS04080 0.30 +1.2 924,664 - PFLU_RS04080 0.31 -2.0 924,664 - PFLU_RS04080 0.31 +0.4 924,664 - PFLU_RS04080 0.31 +0.3 924,844 + -2.0 924,844 + -0.8 924,844 + +0.4 924,845 - +0.8 924,845 - -1.2 924,845 - +0.7 924,845 - +0.1 924,845 - -0.7 924,927 + +1.6 924,928 - -1.3 925,008 + -0.4 925,009 - -2.3 925,073 + -0.3 925,073 + +1.2 925,073 + -0.8 925,074 - -0.9 925,074 - +0.4 925,116 + +1.8 925,166 + -1.2 925,299 - PFLU_RS04085 0.23 +0.8 925,299 - PFLU_RS04085 0.23 +0.8 925,299 - PFLU_RS04085 0.23 -0.2 925,299 - PFLU_RS04085 0.23 +0.7 925,299 - PFLU_RS04085 0.23 +0.5 925,299 - PFLU_RS04085 0.23 -0.2 925,319 + PFLU_RS04085 0.25 +0.9 925,319 + PFLU_RS04085 0.25 +0.9 925,319 + PFLU_RS04085 0.25 +3.2 925,319 + PFLU_RS04085 0.25 +0.2 925,319 + PFLU_RS04085 0.25 +0.8 925,319 + PFLU_RS04085 0.25 +2.7 925,319 + PFLU_RS04085 0.25 -0.3 925,319 + PFLU_RS04085 0.25 +1.5 925,320 - PFLU_RS04085 0.26 +2.2 925,320 - PFLU_RS04085 0.26 +0.3 925,320 - PFLU_RS04085 0.26 -1.5 925,320 - PFLU_RS04085 0.26 -0.3 925,320 - PFLU_RS04085 0.26 -0.3 925,320 - PFLU_RS04085 0.26 +0.8 925,361 + PFLU_RS04085 0.30 -0.7 925,361 + PFLU_RS04085 0.30 +0.1 925,361 + PFLU_RS04085 0.30 -0.1 925,361 + PFLU_RS04085 0.30 -0.2 925,361 + PFLU_RS04085 0.30 -0.0 925,361 + PFLU_RS04085 0.30 +2.5 925,361 + PFLU_RS04085 0.30 -0.8 925,361 + PFLU_RS04085 0.30 -0.4 925,361 + PFLU_RS04085 0.30 +0.3 925,361 + PFLU_RS04085 0.30 +1.7 925,361 + PFLU_RS04085 0.30 +3.6 925,361 + PFLU_RS04085 0.30 +1.4 925,361 + PFLU_RS04085 0.30 -0.1 925,361 + PFLU_RS04085 0.30 +2.2 925,362 - PFLU_RS04085 0.30 -1.0 925,362 - PFLU_RS04085 0.30 +1.2 925,362 - PFLU_RS04085 0.30 +0.2 925,362 - PFLU_RS04085 0.30 +2.0 925,362 - PFLU_RS04085 0.30 +0.7 925,362 - PFLU_RS04085 0.30 -0.2 925,362 - PFLU_RS04085 0.30 -0.4 925,362 - PFLU_RS04085 0.30 +0.4 925,424 + PFLU_RS04085 0.36 +1.3 925,424 + PFLU_RS04085 0.36 +2.1 925,424 + PFLU_RS04085 0.36 +0.9 925,424 + PFLU_RS04085 0.36 -1.3 925,424 + PFLU_RS04085 0.36 +1.0 925,424 + PFLU_RS04085 0.36 +1.3 925,425 - PFLU_RS04085 0.36 +0.5 925,425 - PFLU_RS04085 0.36 +0.8 925,425 - PFLU_RS04085 0.36 +0.8 925,425 - PFLU_RS04085 0.36 +3.1 925,425 - PFLU_RS04085 0.36 -0.2 925,425 - PFLU_RS04085 0.36 -2.3 925,425 - PFLU_RS04085 0.36 -0.8 925,425 - PFLU_RS04085 0.36 -0.2 925,604 + PFLU_RS04085 0.55 +1.6 925,604 + PFLU_RS04085 0.55 +0.8 925,605 - PFLU_RS04085 0.55 +1.4 925,742 + PFLU_RS04085 0.69 +1.3 925,743 - PFLU_RS04085 0.69 +0.1 925,743 - PFLU_RS04085 0.69 -0.8
Or see this region's nucleotide sequence