Experiment: p-Coumaric (C) 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS01850 and PFLU_RS01855 are separated by 37 nucleotides PFLU_RS01855 and PFLU_RS01860 overlap by 8 nucleotides PFLU_RS01860 and PFLU_RS01865 are separated by 193 nucleotides
PFLU_RS01850: PFLU_RS01850 - transporter substrate-binding domain-containing protein, at 418,181 to 418,978
_RS01850
PFLU_RS01855: PFLU_RS01855 - amino acid ABC transporter permease, at 419,016 to 419,975
_RS01855
PFLU_RS01860: PFLU_RS01860 - amino acid ABC transporter ATP-binding protein, at 419,968 to 420,702
_RS01860
PFLU_RS01865: PFLU_RS01865 - methyl-accepting chemotaxis protein, at 420,896 to 422,803
_RS01865
Position (kb) 419
420
421 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 418.977 kb on - strand at 418.977 kb on - strand at 419.013 kb on + strand at 419.013 kb on + strand at 419.091 kb on + strand at 419.091 kb on + strand at 419.091 kb on + strand at 419.091 kb on + strand at 419.092 kb on - strand at 419.092 kb on - strand at 419.092 kb on - strand at 419.094 kb on + strand at 419.094 kb on + strand at 419.094 kb on + strand at 419.094 kb on + strand at 419.094 kb on + strand at 419.095 kb on - strand at 419.095 kb on - strand at 419.095 kb on - strand at 419.095 kb on - strand at 419.095 kb on - strand at 419.095 kb on - strand at 419.115 kb on + strand, within PFLU_RS01855 at 419.115 kb on + strand, within PFLU_RS01855 at 419.116 kb on - strand, within PFLU_RS01855 at 419.116 kb on - strand, within PFLU_RS01855 at 419.116 kb on - strand, within PFLU_RS01855 at 419.145 kb on + strand, within PFLU_RS01855 at 419.145 kb on + strand, within PFLU_RS01855 at 419.146 kb on - strand, within PFLU_RS01855 at 419.389 kb on + strand, within PFLU_RS01855 at 419.389 kb on + strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.390 kb on - strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.493 kb on + strand, within PFLU_RS01855 at 419.494 kb on - strand, within PFLU_RS01855 at 419.494 kb on - strand, within PFLU_RS01855 at 419.494 kb on - strand, within PFLU_RS01855 at 419.494 kb on - strand, within PFLU_RS01855 at 419.513 kb on + strand, within PFLU_RS01855 at 419.521 kb on + strand, within PFLU_RS01855 at 419.521 kb on + strand, within PFLU_RS01855 at 419.544 kb on + strand, within PFLU_RS01855 at 419.544 kb on + strand, within PFLU_RS01855 at 419.545 kb on - strand, within PFLU_RS01855 at 419.559 kb on - strand, within PFLU_RS01855 at 419.612 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.622 kb on + strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.623 kb on - strand, within PFLU_RS01855 at 419.729 kb on - strand, within PFLU_RS01855 at 419.777 kb on + strand, within PFLU_RS01855 at 419.777 kb on + strand, within PFLU_RS01855 at 419.778 kb on - strand, within PFLU_RS01855 at 419.904 kb on + strand at 419.904 kb on + strand at 419.905 kb on - strand at 419.990 kb on + strand at 419.991 kb on - strand at 419.991 kb on - strand at 420.065 kb on + strand, within PFLU_RS01860 at 420.065 kb on + strand, within PFLU_RS01860 at 420.065 kb on + strand, within PFLU_RS01860 at 420.066 kb on - strand, within PFLU_RS01860 at 420.066 kb on - strand, within PFLU_RS01860 at 420.071 kb on + strand, within PFLU_RS01860 at 420.072 kb on - strand, within PFLU_RS01860 at 420.203 kb on - strand, within PFLU_RS01860 at 420.700 kb on + strand at 420.700 kb on + strand at 420.700 kb on + strand at 420.701 kb on - strand at 420.701 kb on - strand at 420.721 kb on + strand at 420.779 kb on - strand at 421.011 kb on - strand at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.283 kb on + strand, within PFLU_RS01865 at 421.284 kb on - strand, within PFLU_RS01865 at 421.284 kb on - strand, within PFLU_RS01865 at 421.284 kb on - strand, within PFLU_RS01865 at 421.284 kb on - strand, within PFLU_RS01865 at 421.284 kb on - strand, within PFLU_RS01865 at 421.295 kb on + strand, within PFLU_RS01865 at 421.552 kb on + strand, within PFLU_RS01865
Per-strain Table
Position Strand Gene LocusTag Fraction p-Coumaric (C) 5 mM remove 418,977 - +0.9 418,977 - +2.0 419,013 + -1.5 419,013 + +1.7 419,091 + +0.8 419,091 + +0.4 419,091 + +1.1 419,091 + -1.7 419,092 - +1.5 419,092 - +0.4 419,092 - +2.0 419,094 + +0.8 419,094 + +2.3 419,094 + -0.1 419,094 + -0.3 419,094 + +0.7 419,095 - +0.6 419,095 - -0.2 419,095 - -1.0 419,095 - -1.5 419,095 - +3.3 419,095 - -1.9 419,115 + PFLU_RS01855 0.10 +0.1 419,115 + PFLU_RS01855 0.10 +0.2 419,116 - PFLU_RS01855 0.10 -0.1 419,116 - PFLU_RS01855 0.10 -0.8 419,116 - PFLU_RS01855 0.10 +0.7 419,145 + PFLU_RS01855 0.13 +0.1 419,145 + PFLU_RS01855 0.13 -1.6 419,146 - PFLU_RS01855 0.14 +1.1 419,389 + PFLU_RS01855 0.39 +0.0 419,389 + PFLU_RS01855 0.39 +1.2 419,390 - PFLU_RS01855 0.39 +0.5 419,390 - PFLU_RS01855 0.39 +1.7 419,390 - PFLU_RS01855 0.39 -0.9 419,390 - PFLU_RS01855 0.39 -0.1 419,390 - PFLU_RS01855 0.39 +0.2 419,390 - PFLU_RS01855 0.39 -1.1 419,390 - PFLU_RS01855 0.39 -0.5 419,390 - PFLU_RS01855 0.39 -1.9 419,493 + PFLU_RS01855 0.50 +0.1 419,493 + PFLU_RS01855 0.50 +1.6 419,493 + PFLU_RS01855 0.50 -0.1 419,493 + PFLU_RS01855 0.50 -1.3 419,493 + PFLU_RS01855 0.50 -1.8 419,493 + PFLU_RS01855 0.50 -0.6 419,494 - PFLU_RS01855 0.50 -0.2 419,494 - PFLU_RS01855 0.50 -2.7 419,494 - PFLU_RS01855 0.50 +0.3 419,494 - PFLU_RS01855 0.50 +0.9 419,513 + PFLU_RS01855 0.52 +0.7 419,521 + PFLU_RS01855 0.53 -1.2 419,521 + PFLU_RS01855 0.53 -0.6 419,544 + PFLU_RS01855 0.55 +0.1 419,544 + PFLU_RS01855 0.55 +0.4 419,545 - PFLU_RS01855 0.55 -1.9 419,559 - PFLU_RS01855 0.57 +1.1 419,612 + PFLU_RS01855 0.62 +2.7 419,622 + PFLU_RS01855 0.63 -1.6 419,622 + PFLU_RS01855 0.63 +2.1 419,622 + PFLU_RS01855 0.63 -1.5 419,622 + PFLU_RS01855 0.63 -0.1 419,622 + PFLU_RS01855 0.63 -2.0 419,622 + PFLU_RS01855 0.63 -0.6 419,622 + PFLU_RS01855 0.63 -0.8 419,622 + PFLU_RS01855 0.63 -0.3 419,622 + PFLU_RS01855 0.63 +2.7 419,622 + PFLU_RS01855 0.63 -0.9 419,622 + PFLU_RS01855 0.63 +0.7 419,622 + PFLU_RS01855 0.63 -0.9 419,622 + PFLU_RS01855 0.63 -0.1 419,622 + PFLU_RS01855 0.63 +1.3 419,623 - PFLU_RS01855 0.63 -0.6 419,623 - PFLU_RS01855 0.63 -1.0 419,623 - PFLU_RS01855 0.63 +1.2 419,623 - PFLU_RS01855 0.63 +0.1 419,623 - PFLU_RS01855 0.63 +1.0 419,623 - PFLU_RS01855 0.63 -0.7 419,623 - PFLU_RS01855 0.63 +0.4 419,623 - PFLU_RS01855 0.63 +0.8 419,623 - PFLU_RS01855 0.63 -0.3 419,623 - PFLU_RS01855 0.63 -1.0 419,623 - PFLU_RS01855 0.63 -0.1 419,623 - PFLU_RS01855 0.63 +0.6 419,623 - PFLU_RS01855 0.63 +0.4 419,729 - PFLU_RS01855 0.74 -1.2 419,777 + PFLU_RS01855 0.79 +1.1 419,777 + PFLU_RS01855 0.79 -0.4 419,778 - PFLU_RS01855 0.79 +0.1 419,904 + -1.3 419,904 + -1.7 419,905 - -0.8 419,990 + -2.2 419,991 - -2.3 419,991 - -0.5 420,065 + PFLU_RS01860 0.13 -0.6 420,065 + PFLU_RS01860 0.13 -0.1 420,065 + PFLU_RS01860 0.13 +1.0 420,066 - PFLU_RS01860 0.13 +1.1 420,066 - PFLU_RS01860 0.13 -0.1 420,071 + PFLU_RS01860 0.14 -0.8 420,072 - PFLU_RS01860 0.14 -1.2 420,203 - PFLU_RS01860 0.32 +0.8 420,700 + +0.7 420,700 + +0.1 420,700 + +0.5 420,701 - +0.7 420,701 - +1.1 420,721 + -0.7 420,779 - -1.1 421,011 - -0.8 421,283 + PFLU_RS01865 0.20 -1.5 421,283 + PFLU_RS01865 0.20 +0.7 421,283 + PFLU_RS01865 0.20 -0.6 421,283 + PFLU_RS01865 0.20 +0.1 421,283 + PFLU_RS01865 0.20 +1.2 421,283 + PFLU_RS01865 0.20 -1.4 421,283 + PFLU_RS01865 0.20 -1.2 421,283 + PFLU_RS01865 0.20 -3.1 421,283 + PFLU_RS01865 0.20 -0.8 421,283 + PFLU_RS01865 0.20 -0.1 421,283 + PFLU_RS01865 0.20 +0.8 421,283 + PFLU_RS01865 0.20 -1.5 421,283 + PFLU_RS01865 0.20 -0.5 421,284 - PFLU_RS01865 0.20 +1.4 421,284 - PFLU_RS01865 0.20 +1.1 421,284 - PFLU_RS01865 0.20 -0.2 421,284 - PFLU_RS01865 0.20 +1.1 421,284 - PFLU_RS01865 0.20 -0.9 421,295 + PFLU_RS01865 0.21 +0.8 421,552 + PFLU_RS01865 0.34 +0.1
Or see this region's nucleotide sequence