Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2778

Experiment: Post-colonization (Day 10) - Cage1;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 10) - Cage1;Mouse4
3,443,594	-		BT2777	0.64	-1.9
3,443,655	-		BT2777	0.67	-0.4
3,443,678	+		BT2777	0.68	+0.2
3,443,713	+		BT2777	0.70	-1.6
3,443,713	+		BT2777	0.70	-1.7
3,443,714	-		BT2777	0.70	-1.3
3,443,714	-		BT2777	0.70	-0.8
3,443,715	+		BT2777	0.70	-0.8
3,443,715	+		BT2777	0.70	+1.1
3,443,719	-		BT2777	0.70	-0.0
3,443,767	-		BT2777	0.73	-0.9
3,443,779	+		BT2777	0.73	-0.8
3,443,801	-		BT2777	0.74	-0.8
3,443,824	-		BT2777	0.75	-0.9
3,443,854	+		BT2777	0.77	+1.2
3,443,928	+		BT2777	0.81	-0.8
3,443,929	-		BT2777	0.81	-1.8
3,443,929	-		BT2777	0.81	+1.4
3,443,985	+		BT2777	0.84	-0.3
3,444,043	+		BT2777	0.87	-2.2
3,444,053	-		BT2777	0.87	-2.7
3,444,094	+		BT2777	0.89	-0.3
3,444,095	-		BT2777	0.89	-1.7
3,444,175	+				-1.7
3,444,176	-				+0.0
3,444,229	+				-0.6
3,444,324	+				-0.4
3,444,334	+				-0.5
3,444,354	-				-2.4
3,444,363	-				-0.3
3,444,363	-				+0.1
3,444,363	-				-0.3
3,444,395	+				-2.6
3,444,395	+				-1.3
3,444,537	+				+0.2
3,444,554	+				-1.5
3,444,574	-				+0.2
3,444,592	-				-1.5
3,444,618	+				-1.2
3,444,624	+				-0.8
3,444,631	+				+1.6
3,444,638	+				-1.7
3,444,661	-				-1.1
3,444,661	-				-1.0
3,444,671	+				-2.1
3,444,671	+				-0.5
3,444,671	+				-0.3
3,444,672	-				-0.4
3,444,673	+				-1.7
3,444,675	+				+2.2
3,444,747	+		BT2778	0.11	-1.9
3,444,747	+		BT2778	0.11	-1.1
3,444,748	-		BT2778	0.11	-0.8
3,444,751	+		BT2778	0.11	-0.6
3,444,784	-		BT2778	0.13	-0.5
3,444,784	-		BT2778	0.13	+1.8
3,444,874	+		BT2778	0.19	-2.5
3,444,874	+		BT2778	0.19	-2.5
3,444,881	-		BT2778	0.19	-0.5
3,444,888	+		BT2778	0.20	+0.0
3,444,913	+		BT2778	0.21	-1.3
3,444,914	-		BT2778	0.21	-0.8
3,444,950	+		BT2778	0.23	-0.2
3,444,951	-		BT2778	0.23	-0.5
3,444,970	-		BT2778	0.24	-1.4
3,444,976	-		BT2778	0.25	-0.8
3,444,987	+		BT2778	0.26	-0.0
3,444,988	-		BT2778	0.26	-2.3
3,445,019	-		BT2778	0.27	-2.7
3,445,020	+		BT2778	0.28	-3.2
3,445,021	-		BT2778	0.28	-1.4
3,445,089	-		BT2778	0.32	-3.1
3,445,102	+		BT2778	0.32	-1.3
3,445,102	+		BT2778	0.32	-4.2
3,445,102	+		BT2778	0.32	-0.0
3,445,103	-		BT2778	0.33	-0.5
3,445,103	-		BT2778	0.33	-1.1
3,445,103	-		BT2778	0.33	-2.6
3,445,104	+		BT2778	0.33	-1.2
3,445,143	-		BT2778	0.35	-3.2
3,445,146	+		BT2778	0.35	-1.2
3,445,147	-		BT2778	0.35	+1.2
3,445,147	-		BT2778	0.35	-2.4
3,445,175	-		BT2778	0.37	+0.1
3,445,175	-		BT2778	0.37	-2.4
3,445,187	-		BT2778	0.38	-1.8
3,445,240	+		BT2778	0.41	+0.2
3,445,241	-		BT2778	0.41	-0.3
3,445,241	-		BT2778	0.41	-0.6
3,445,255	+		BT2778	0.42	-1.2
3,445,256	-		BT2778	0.42	-2.4
3,445,256	-		BT2778	0.42	-1.9
3,445,285	+		BT2778	0.44	-0.8
3,445,285	+		BT2778	0.44	-1.7
3,445,291	+		BT2778	0.44	-0.9
3,445,292	-		BT2778	0.44	-0.8
3,445,297	-		BT2778	0.44	-1.8
3,445,341	+		BT2778	0.47	-0.8
3,445,341	+		BT2778	0.47	-0.8
3,445,359	+		BT2778	0.48	-1.6
3,445,402	+		BT2778	0.51	-1.1
3,445,402	+		BT2778	0.51	-1.4
3,445,430	-		BT2778	0.52	-1.6
3,445,439	+		BT2778	0.53	-1.7
3,445,479	+		BT2778	0.55	+2.8
3,445,538	+		BT2778	0.59	-0.8
3,445,538	+		BT2778	0.59	-1.3
3,445,613	+		BT2778	0.63	-1.0
3,445,614	-		BT2778	0.64	+0.2
3,445,616	+		BT2778	0.64	-0.7
3,445,617	-		BT2778	0.64	-1.9
3,445,622	+		BT2778	0.64	-0.1
3,445,666	+		BT2778	0.67	-2.0
3,445,705	+		BT2778	0.69	-0.8
3,445,708	-		BT2778	0.69	-2.1
3,445,723	+		BT2778	0.70	-0.6
3,445,723	+		BT2778	0.70	-1.6
3,445,724	-		BT2778	0.70	-0.8
3,445,724	-		BT2778	0.70	-1.2
3,445,724	-		BT2778	0.70	-0.4
3,445,724	-		BT2778	0.70	+1.9
3,445,799	+		BT2778	0.75	+0.0
3,445,802	-		BT2778	0.75	-1.3
3,445,868	+		BT2778	0.79	-1.4
3,445,868	+		BT2778	0.79	-1.4
3,445,869	-		BT2778	0.79	-1.0
3,445,872	+		BT2778	0.79	-2.1
3,445,872	+		BT2778	0.79	+1.2
3,445,872	+		BT2778	0.79	-2.3
3,445,872	+		BT2778	0.79	-1.7
3,445,876	+		BT2778	0.79	-0.4
3,445,910	+		BT2778	0.81	-1.4
3,445,911	-		BT2778	0.82	+0.6
3,445,979	-		BT2778	0.86	-1.6
3,445,996	+		BT2778	0.87	-1.1
3,445,997	-		BT2778	0.87	+0.6
3,446,009	-		BT2778	0.87	-1.6
3,446,028	+		BT2778	0.89	-0.7
3,446,070	+				-2.4
3,446,070	+				-0.8
3,446,071	-				+0.2
3,446,083	+				-0.4
3,446,102	+				+1.2
3,446,102	+				+0.2
3,446,102	+				+0.7
3,446,102	+				-2.7
3,446,102	+				-1.3
3,446,105	-				-0.5
3,446,120	-				-1.1
3,446,123	+				-1.6
3,446,123	+				-1.0
3,446,124	-				+1.2
3,446,128	+				-0.6
3,446,193	+				-2.1
3,446,194	-				-1.0
3,446,254	-				+0.6
3,446,258	+				-1.1
3,446,263	-				-2.6
3,446,265	-				-1.0
3,446,265	-				-1.4
3,446,308	+				-0.1
3,446,309	-				+1.2
3,446,309	-				-1.9
3,446,309	-				-0.6
3,446,357	+				+0.6
3,446,358	-				+0.8
3,446,361	-				-0.3
3,446,362	+				-1.6
3,446,381	+		BT2779	0.11	-0.8
3,446,406	+		BT2779	0.14	-0.8
3,446,458	-		BT2779	0.21	-0.3
3,446,560	+		BT2779	0.34	-2.1
3,446,568	+		BT2779	0.35	-0.4
3,446,616	+		BT2779	0.41	-0.4
3,446,617	-		BT2779	0.42	-1.2
3,446,619	+		BT2779	0.42	-1.1
3,446,620	-		BT2779	0.42	-0.3
3,446,620	-		BT2779	0.42	-1.3
3,446,755	+		BT2779	0.59	+0.9
3,446,755	+		BT2779	0.59	-1.4
3,446,781	+		BT2779	0.63	-1.9
3,446,781	+		BT2779	0.63	-1.8
3,446,782	-		BT2779	0.63	-0.8
3,446,791	+		BT2779	0.64	-2.4
3,446,792	-		BT2779	0.64	-1.8
3,446,792	-		BT2779	0.64	-0.4
3,446,798	+		BT2779	0.65	+0.0
3,446,809	-		BT2779	0.66	-0.9
3,446,850	+		BT2779	0.72	-1.9
3,446,854	-		BT2779	0.72	-0.7
3,446,902	-		BT2779	0.78	-0.6
3,446,937	+		BT2779	0.83	+0.3
3,446,937	+		BT2779	0.83	+0.6
3,446,965	+		BT2779	0.86	-0.9
3,446,966	-		BT2779	0.86	-1.6
3,447,010	+				-1.8
3,447,010	+				-0.8
3,447,010	+				-1.8
3,447,011	-				-1.1
3,447,031	-				-1.1
3,447,031	-				-1.1
3,447,065	-				-0.2
3,447,093	+				-0.9
3,447,094	-				-1.9
3,447,108	+				-1.9
3,447,126	-				+1.2
3,447,142	+				-1.8
3,447,151	+				-0.5
3,447,183	+				-0.6