Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02343 and SMc02344 are separated by 141 nucleotides SMc02344 and SMc02345 are separated by 58 nucleotides SMc02345 and SMc02346 are separated by 11 nucleotides
SMc02343: SMc02343 - transport transmembrane protein, at 2,765,690 to 2,767,129
SMc02343
SMc02344: SMc02344 - periplasmic binding protein, at 2,767,271 to 2,768,305
SMc02344
SMc02345: SMc02345 - ABC transporter permease, at 2,768,364 to 2,769,227
SMc02345
SMc02346: SMc02346 - ABC transporter ATP-binding protein, at 2,769,239 to 2,770,075
SMc02346
Position (kb)
2767
2768
2769 Strain fitness (log2 ratio)
-1
0
1 at 2766.915 kb on - strand, within SMc02343 at 2766.915 kb on - strand, within SMc02343 at 2766.979 kb on + strand, within SMc02343 at 2766.980 kb on - strand, within SMc02343 at 2767.262 kb on + strand at 2767.265 kb on + strand at 2767.266 kb on - strand at 2767.266 kb on - strand at 2767.308 kb on + strand at 2767.309 kb on - strand at 2767.431 kb on + strand, within SMc02344 at 2767.886 kb on + strand, within SMc02344 at 2767.887 kb on - strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.016 kb on + strand, within SMc02344 at 2768.017 kb on - strand, within SMc02344 at 2768.017 kb on - strand, within SMc02344 at 2768.311 kb on + strand at 2768.312 kb on - strand at 2768.312 kb on - strand at 2768.431 kb on + strand at 2768.431 kb on + strand at 2768.432 kb on - strand at 2768.476 kb on + strand, within SMc02345 at 2768.476 kb on + strand, within SMc02345 at 2768.477 kb on - strand, within SMc02345 at 2768.477 kb on - strand, within SMc02345 at 2769.126 kb on - strand, within SMc02345 at 2769.249 kb on + strand at 2769.250 kb on - strand at 2769.250 kb on - strand at 2769.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,766,915 - SMc02343 0.85 +0.2 2,766,915 - SMc02343 0.85 +0.2 2,766,979 + SMc02343 0.90 +0.2 2,766,980 - SMc02343 0.90 -1.1 2,767,262 + -0.0 2,767,265 + +0.0 2,767,266 - -0.2 2,767,266 - -0.9 2,767,308 + -0.0 2,767,309 - -1.6 2,767,431 + SMc02344 0.15 -0.3 2,767,886 + SMc02344 0.59 -0.4 2,767,887 - SMc02344 0.60 -0.1 2,768,016 + SMc02344 0.72 -0.2 2,768,016 + SMc02344 0.72 -0.7 2,768,016 + SMc02344 0.72 -0.9 2,768,016 + SMc02344 0.72 -0.7 2,768,017 - SMc02344 0.72 -1.1 2,768,017 - SMc02344 0.72 -0.4 2,768,311 + -0.4 2,768,312 - -0.1 2,768,312 - -0.6 2,768,431 + -0.3 2,768,431 + -0.1 2,768,432 - -0.8 2,768,476 + SMc02345 0.13 +0.6 2,768,476 + SMc02345 0.13 -0.1 2,768,477 - SMc02345 0.13 -0.1 2,768,477 - SMc02345 0.13 +0.2 2,769,126 - SMc02345 0.88 -0.4 2,769,249 + -0.4 2,769,250 - -0.9 2,769,250 - +0.1 2,769,250 - +0.6
Or see this region's nucleotide sequence