Strain Fitness in Sinorhizobium meliloti 1021 around SMc02344

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02343 and SMc02344 are separated by 141 nucleotidesSMc02344 and SMc02345 are separated by 58 nucleotidesSMc02345 and SMc02346 are separated by 11 nucleotides SMc02343: SMc02343 - transport transmembrane protein, at 2,765,690 to 2,767,129 SMc02343 SMc02344: SMc02344 - periplasmic binding protein, at 2,767,271 to 2,768,305 SMc02344 SMc02345: SMc02345 - ABC transporter permease, at 2,768,364 to 2,769,227 SMc02345 SMc02346: SMc02346 - ABC transporter ATP-binding protein, at 2,769,239 to 2,770,075 SMc02346 Position (kb) 2767 2768 2769Strain fitness (log2 ratio) -1 0 1at 2766.915 kb on - strand, within SMc02343at 2766.915 kb on - strand, within SMc02343at 2766.979 kb on + strand, within SMc02343at 2766.980 kb on - strand, within SMc02343at 2767.262 kb on + strandat 2767.265 kb on + strandat 2767.266 kb on - strandat 2767.266 kb on - strandat 2767.308 kb on + strandat 2767.309 kb on - strandat 2767.431 kb on + strand, within SMc02344at 2767.886 kb on + strand, within SMc02344at 2767.887 kb on - strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.016 kb on + strand, within SMc02344at 2768.017 kb on - strand, within SMc02344at 2768.017 kb on - strand, within SMc02344at 2768.311 kb on + strandat 2768.312 kb on - strandat 2768.312 kb on - strandat 2768.431 kb on + strandat 2768.431 kb on + strandat 2768.432 kb on - strandat 2768.476 kb on + strand, within SMc02345at 2768.476 kb on + strand, within SMc02345at 2768.477 kb on - strand, within SMc02345at 2768.477 kb on - strand, within SMc02345at 2769.126 kb on - strand, within SMc02345at 2769.249 kb on + strandat 2769.250 kb on - strandat 2769.250 kb on - strandat 2769.250 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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2,766,915 - SMc02343 0.85 +0.2
2,766,915 - SMc02343 0.85 +0.2
2,766,979 + SMc02343 0.90 +0.2
2,766,980 - SMc02343 0.90 -1.1
2,767,262 + -0.0
2,767,265 + +0.0
2,767,266 - -0.2
2,767,266 - -0.9
2,767,308 + -0.0
2,767,309 - -1.6
2,767,431 + SMc02344 0.15 -0.3
2,767,886 + SMc02344 0.59 -0.4
2,767,887 - SMc02344 0.60 -0.1
2,768,016 + SMc02344 0.72 -0.2
2,768,016 + SMc02344 0.72 -0.7
2,768,016 + SMc02344 0.72 -0.9
2,768,016 + SMc02344 0.72 -0.7
2,768,017 - SMc02344 0.72 -1.1
2,768,017 - SMc02344 0.72 -0.4
2,768,311 + -0.4
2,768,312 - -0.1
2,768,312 - -0.6
2,768,431 + -0.3
2,768,431 + -0.1
2,768,432 - -0.8
2,768,476 + SMc02345 0.13 +0.6
2,768,476 + SMc02345 0.13 -0.1
2,768,477 - SMc02345 0.13 -0.1
2,768,477 - SMc02345 0.13 +0.2
2,769,126 - SMc02345 0.88 -0.4
2,769,249 + -0.4
2,769,250 - -0.9
2,769,250 - +0.1
2,769,250 - +0.6

Or see this region's nucleotide sequence