Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01414 and SMc01415 are separated by 145 nucleotides SMc01415 and SMc01416 are separated by 6 nucleotides SMc01416 and SMc01417 are separated by 74 nucleotides SMc01417 and SMc01418 are separated by 292 nucleotides
SMc01414: SMc01414 - hypothetical protein, at 2,263,348 to 2,264,580
SMc01414
SMc01415: SMc01415 - transmembrane protein, at 2,264,726 to 2,265,814
SMc01415
SMc01416: SMc01416 - hypothetical protein, at 2,265,821 to 2,266,180
SMc01416
SMc01417: SMc01417 - hypothetical protein, at 2,266,255 to 2,266,422
SMc01417
SMc01418: SMc01418 - signal peptide protein, at 2,266,715 to 2,267,089
SMc01418
Position (kb)
2264
2265
2266 Strain fitness (log2 ratio)
-2
-1
0
1 at 2263.759 kb on - strand, within SMc01414 at 2263.791 kb on - strand, within SMc01414 at 2263.945 kb on - strand, within SMc01414 at 2264.009 kb on + strand, within SMc01414 at 2264.009 kb on + strand, within SMc01414 at 2264.010 kb on - strand, within SMc01414 at 2264.237 kb on + strand, within SMc01414 at 2264.238 kb on - strand, within SMc01414 at 2264.385 kb on - strand, within SMc01414 at 2264.558 kb on - strand at 2264.686 kb on - strand at 2264.686 kb on - strand at 2265.180 kb on - strand, within SMc01415 at 2265.215 kb on + strand, within SMc01415 at 2265.215 kb on + strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.216 kb on - strand, within SMc01415 at 2265.378 kb on + strand, within SMc01415 at 2265.378 kb on + strand, within SMc01415 at 2265.379 kb on - strand, within SMc01415 at 2265.379 kb on - strand, within SMc01415 at 2265.509 kb on - strand, within SMc01415 at 2265.591 kb on + strand, within SMc01415 at 2265.592 kb on - strand, within SMc01415 at 2265.606 kb on + strand, within SMc01415 at 2265.657 kb on - strand, within SMc01415 at 2265.762 kb on + strand at 2265.763 kb on - strand at 2266.242 kb on + strand at 2266.242 kb on + strand at 2266.243 kb on - strand at 2266.349 kb on + strand, within SMc01417 at 2266.349 kb on + strand, within SMc01417 at 2266.349 kb on + strand, within SMc01417 at 2266.349 kb on + strand, within SMc01417 at 2266.350 kb on - strand, within SMc01417 at 2266.420 kb on + strand at 2266.462 kb on - strand at 2266.471 kb on - strand at 2266.559 kb on + strand at 2266.559 kb on + strand at 2266.642 kb on + strand at 2266.642 kb on + strand at 2266.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 2,263,759 - SMc01414 0.33 -0.7 2,263,791 - SMc01414 0.36 +0.5 2,263,945 - SMc01414 0.48 -0.7 2,264,009 + SMc01414 0.54 +0.5 2,264,009 + SMc01414 0.54 +0.3 2,264,010 - SMc01414 0.54 +0.6 2,264,237 + SMc01414 0.72 -0.7 2,264,238 - SMc01414 0.72 -0.8 2,264,385 - SMc01414 0.84 -0.3 2,264,558 - -0.3 2,264,686 - +0.2 2,264,686 - +0.1 2,265,180 - SMc01415 0.42 +0.7 2,265,215 + SMc01415 0.45 -0.4 2,265,215 + SMc01415 0.45 -0.4 2,265,216 - SMc01415 0.45 -2.0 2,265,216 - SMc01415 0.45 +0.2 2,265,216 - SMc01415 0.45 -0.7 2,265,378 + SMc01415 0.60 +1.0 2,265,378 + SMc01415 0.60 +0.2 2,265,379 - SMc01415 0.60 +0.0 2,265,379 - SMc01415 0.60 +0.9 2,265,509 - SMc01415 0.72 +0.1 2,265,591 + SMc01415 0.79 +0.0 2,265,592 - SMc01415 0.80 -0.1 2,265,606 + SMc01415 0.81 +0.1 2,265,657 - SMc01415 0.85 +0.3 2,265,762 + -0.5 2,265,763 - +0.0 2,266,242 + -0.8 2,266,242 + -0.9 2,266,243 - -0.1 2,266,349 + SMc01417 0.56 +0.0 2,266,349 + SMc01417 0.56 +1.3 2,266,349 + SMc01417 0.56 +0.1 2,266,349 + SMc01417 0.56 -0.3 2,266,350 - SMc01417 0.57 +1.5 2,266,420 + +1.2 2,266,462 - -0.5 2,266,471 - +0.6 2,266,559 + +0.1 2,266,559 + -0.3 2,266,642 + -0.5 2,266,642 + +0.1 2,266,642 + +0.3
Or see this region's nucleotide sequence