Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20280

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20278 and SM_b20279 are separated by 1 nucleotidesSM_b20279 and SM_b20280 are separated by 31 nucleotidesSM_b20280 and SM_b20281 are separated by 81 nucleotides SM_b20278: SM_b20278 - hypothetical protein, at 282,954 to 283,532 _b20278 SM_b20279: SM_b20279 - hypothetical protein, at 283,534 to 284,037 _b20279 SM_b20280: SM_b20280 - hypothetical protein, at 284,069 to 285,535 _b20280 SM_b20281: SM_b20281 - spermidine/putrescine ABC transporter ATP-binding protein, at 285,617 to 286,687 _b20281 Position (kb) 284 285 286Strain fitness (log2 ratio) -2 -1 0 1at 283.075 kb on + strand, within SM_b20278at 283.075 kb on + strand, within SM_b20278at 283.076 kb on - strand, within SM_b20278at 283.180 kb on + strand, within SM_b20278at 283.222 kb on + strand, within SM_b20278at 283.322 kb on + strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.323 kb on - strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.324 kb on + strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.325 kb on - strand, within SM_b20278at 283.349 kb on + strand, within SM_b20278at 283.350 kb on - strand, within SM_b20278at 283.409 kb on + strand, within SM_b20278at 283.468 kb on - strand, within SM_b20278at 283.480 kb on + strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.481 kb on - strandat 283.618 kb on - strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.808 kb on + strand, within SM_b20279at 283.809 kb on - strand, within SM_b20279at 284.143 kb on - strandat 284.166 kb on - strandat 284.280 kb on + strand, within SM_b20280at 284.281 kb on - strand, within SM_b20280at 284.406 kb on + strand, within SM_b20280at 284.662 kb on - strand, within SM_b20280at 285.196 kb on - strand, within SM_b20280at 285.471 kb on + strandat 285.471 kb on + strandat 285.472 kb on - strandat 285.539 kb on - strandat 285.829 kb on - strand, within SM_b20281at 285.829 kb on - strand, within SM_b20281at 286.020 kb on + strand, within SM_b20281at 286.020 kb on + strand, within SM_b20281at 286.020 kb on + strand, within SM_b20281at 286.434 kb on + strand, within SM_b20281at 286.435 kb on - strand, within SM_b20281at 286.504 kb on - strand, within SM_b20281at 286.504 kb on - strand, within SM_b20281at 286.504 kb on - strand, within SM_b20281

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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283,075 + SM_b20278 0.21 -0.4
283,075 + SM_b20278 0.21 -0.3
283,076 - SM_b20278 0.21 -0.1
283,180 + SM_b20278 0.39 -1.4
283,222 + SM_b20278 0.46 -0.3
283,322 + SM_b20278 0.64 -0.4
283,323 - SM_b20278 0.64 +0.1
283,323 - SM_b20278 0.64 +0.4
283,323 - SM_b20278 0.64 -0.3
283,323 - SM_b20278 0.64 -0.3
283,324 + SM_b20278 0.64 +0.4
283,324 + SM_b20278 0.64 +0.7
283,325 - SM_b20278 0.64 +0.2
283,325 - SM_b20278 0.64 +0.7
283,325 - SM_b20278 0.64 +0.4
283,349 + SM_b20278 0.68 -0.4
283,350 - SM_b20278 0.68 +0.3
283,409 + SM_b20278 0.79 -0.3
283,468 - SM_b20278 0.89 +0.1
283,480 + -1.3
283,481 - +0.4
283,481 - -1.3
283,481 - +0.5
283,481 - +0.6
283,618 - SM_b20279 0.17 +1.0
283,808 + SM_b20279 0.54 +1.0
283,808 + SM_b20279 0.54 +0.8
283,808 + SM_b20279 0.54 -0.1
283,808 + SM_b20279 0.54 +0.4
283,808 + SM_b20279 0.54 +0.4
283,808 + SM_b20279 0.54 +0.4
283,809 - SM_b20279 0.55 -0.4
284,143 - -0.9
284,166 - -0.4
284,280 + SM_b20280 0.14 -1.9
284,281 - SM_b20280 0.14 -0.4
284,406 + SM_b20280 0.23 +0.2
284,662 - SM_b20280 0.40 -2.1
285,196 - SM_b20280 0.77 -0.4
285,471 + -0.3
285,471 + -0.2
285,472 - -1.3
285,539 - +0.1
285,829 - SM_b20281 0.20 +0.2
285,829 - SM_b20281 0.20 -0.8
286,020 + SM_b20281 0.38 +0.3
286,020 + SM_b20281 0.38 +0.1
286,020 + SM_b20281 0.38 -0.6
286,434 + SM_b20281 0.76 -0.4
286,435 - SM_b20281 0.76 +0.0
286,504 - SM_b20281 0.83 -1.4
286,504 - SM_b20281 0.83 -0.5
286,504 - SM_b20281 0.83 -1.1

Or see this region's nucleotide sequence