Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0806

Experiment: Cholin acetate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0804 and Psest_0805 are separated by 23 nucleotidesPsest_0805 and Psest_0806 overlap by 4 nucleotidesPsest_0806 and Psest_0807 overlap by 4 nucleotidesPsest_0807 and Psest_0808 overlap by 4 nucleotides Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445 _0804 Psest_0805: Psest_0805 - hypothetical protein, at 881,469 to 881,942 _0805 Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054 _0806 Psest_0807: Psest_0807 - type IV pilus modification protein PilV, at 883,051 to 883,620 _0807 Psest_0808: Psest_0808 - prepilin-type N-terminal cleavage/methylation domain, at 883,617 to 884,009 _0808 Position (kb) 881 882 883 884Strain fitness (log2 ratio) -2 -1 0 1 2 3at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.162 kb on + strandat 881.162 kb on + strandat 881.162 kb on + strandat 881.163 kb on - strandat 881.163 kb on - strandat 881.203 kb on - strandat 881.304 kb on + strandat 881.305 kb on - strandat 881.305 kb on - strandat 881.451 kb on + strandat 881.451 kb on + strandat 881.624 kb on + strand, within Psest_0805at 881.682 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.991 kb on + strandat 881.992 kb on - strandat 881.992 kb on - strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.244 kb on - strand, within Psest_0806at 882.308 kb on - strand, within Psest_0806at 882.308 kb on - strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.426 kb on + strand, within Psest_0806at 882.426 kb on + strand, within Psest_0806at 882.510 kb on + strand, within Psest_0806at 882.546 kb on + strand, within Psest_0806at 882.546 kb on + strand, within Psest_0806at 882.547 kb on - strand, within Psest_0806at 882.611 kb on + strand, within Psest_0806at 882.650 kb on + strand, within Psest_0806at 882.672 kb on - strand, within Psest_0806at 882.681 kb on + strand, within Psest_0806at 882.717 kb on + strand, within Psest_0806at 882.718 kb on - strand, within Psest_0806at 882.736 kb on + strand, within Psest_0806at 882.737 kb on - strand, within Psest_0806at 882.737 kb on - strand, within Psest_0806at 882.738 kb on + strand, within Psest_0806at 882.739 kb on - strand, within Psest_0806at 882.758 kb on + strand, within Psest_0806at 882.792 kb on + strand, within Psest_0806at 882.792 kb on + strand, within Psest_0806at 882.940 kb on - strand, within Psest_0806at 883.081 kb on + strandat 883.153 kb on + strand, within Psest_0807at 883.154 kb on - strand, within Psest_0807at 883.154 kb on - strand, within Psest_0807at 883.211 kb on + strand, within Psest_0807at 883.211 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.400 kb on + strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.401 kb on - strand, within Psest_0807at 883.478 kb on + strand, within Psest_0807at 883.478 kb on + strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.479 kb on - strand, within Psest_0807at 883.711 kb on + strand, within Psest_0808at 883.711 kb on + strand, within Psest_0808at 883.740 kb on - strand, within Psest_0808at 883.753 kb on + strand, within Psest_0808at 883.754 kb on - strand, within Psest_0808at 883.754 kb on - strand, within Psest_0808at 883.796 kb on + strand, within Psest_0808at 883.796 kb on + strand, within Psest_0808at 883.797 kb on - strand, within Psest_0808at 883.816 kb on + strand, within Psest_0808at 883.816 kb on + strand, within Psest_0808at 883.906 kb on + strand, within Psest_0808at 883.906 kb on + strand, within Psest_0808at 883.907 kb on - strand, within Psest_0808at 883.907 kb on - strand, within Psest_0808at 883.968 kb on + strand, within Psest_0808at 883.968 kb on + strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.969 kb on - strand, within Psest_0808at 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.997 kb on + strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 883.998 kb on - strandat 884.034 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cholin acetate 40 mM
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881,027 + Psest_0804 0.86 -0.1
881,027 + Psest_0804 0.86 -2.4
881,027 + Psest_0804 0.86 +0.1
881,027 + Psest_0804 0.86 -0.0
881,033 + Psest_0804 0.86 -0.1
881,033 + Psest_0804 0.86 -0.5
881,033 + Psest_0804 0.86 -1.1
881,033 + Psest_0804 0.86 +0.8
881,162 + -0.2
881,162 + +0.4
881,162 + -0.3
881,163 - +0.3
881,163 - -0.7
881,203 - +0.8
881,304 + -0.8
881,305 - +0.6
881,305 - +0.4
881,451 + +1.8
881,451 + +0.3
881,624 + Psest_0805 0.33 +1.1
881,682 + Psest_0805 0.45 +1.9
881,689 + Psest_0805 0.46 +1.2
881,689 + Psest_0805 0.46 +1.9
881,689 + Psest_0805 0.46 +0.4
881,689 + Psest_0805 0.46 -0.1
881,991 + -0.1
881,992 - -0.2
881,992 - +0.1
882,048 + -0.5
882,048 + -0.3
882,048 + +0.1
882,048 + +0.7
882,048 + -1.6
882,049 - +0.2
882,049 - +0.6
882,049 - -1.4
882,049 - -0.4
882,244 - Psest_0806 0.27 +1.0
882,308 - Psest_0806 0.33 +0.6
882,308 - Psest_0806 0.33 +0.5
882,423 + Psest_0806 0.43 -1.3
882,423 + Psest_0806 0.43 -1.4
882,423 + Psest_0806 0.43 +0.7
882,423 + Psest_0806 0.43 -0.4
882,423 + Psest_0806 0.43 -0.2
882,423 + Psest_0806 0.43 -0.6
882,423 + Psest_0806 0.43 -0.4
882,424 - Psest_0806 0.43 +0.5
882,424 - Psest_0806 0.43 -0.1
882,424 - Psest_0806 0.43 +1.5
882,424 - Psest_0806 0.43 +0.2
882,424 - Psest_0806 0.43 +0.5
882,426 + Psest_0806 0.44 +0.3
882,426 + Psest_0806 0.44 +2.1
882,510 + Psest_0806 0.51 +1.0
882,546 + Psest_0806 0.54 +1.4
882,546 + Psest_0806 0.54 +0.6
882,547 - Psest_0806 0.54 -0.6
882,611 + Psest_0806 0.60 -0.3
882,650 + Psest_0806 0.64 +1.0
882,672 - Psest_0806 0.66 +1.6
882,681 + Psest_0806 0.66 +2.9
882,717 + Psest_0806 0.70 -2.7
882,718 - Psest_0806 0.70 +1.0
882,736 + Psest_0806 0.71 +0.6
882,737 - Psest_0806 0.72 +0.2
882,737 - Psest_0806 0.72 +0.2
882,738 + Psest_0806 0.72 +0.8
882,739 - Psest_0806 0.72 +0.4
882,758 + Psest_0806 0.73 +0.3
882,792 + Psest_0806 0.76 -0.4
882,792 + Psest_0806 0.76 +1.1
882,940 - Psest_0806 0.90 +1.0
883,081 + -0.2
883,153 + Psest_0807 0.18 +1.3
883,154 - Psest_0807 0.18 +0.4
883,154 - Psest_0807 0.18 +2.2
883,211 + Psest_0807 0.28 -0.9
883,211 + Psest_0807 0.28 -0.3
883,400 + Psest_0807 0.61 +0.8
883,400 + Psest_0807 0.61 +0.2
883,400 + Psest_0807 0.61 -0.1
883,400 + Psest_0807 0.61 +0.5
883,400 + Psest_0807 0.61 +0.4
883,400 + Psest_0807 0.61 -2.2
883,400 + Psest_0807 0.61 +1.1
883,400 + Psest_0807 0.61 -0.7
883,400 + Psest_0807 0.61 +0.6
883,400 + Psest_0807 0.61 -1.1
883,400 + Psest_0807 0.61 -1.5
883,401 - Psest_0807 0.61 +1.6
883,401 - Psest_0807 0.61 -0.4
883,401 - Psest_0807 0.61 +0.1
883,401 - Psest_0807 0.61 +0.6
883,401 - Psest_0807 0.61 +2.2
883,401 - Psest_0807 0.61 +1.1
883,401 - Psest_0807 0.61 -0.1
883,401 - Psest_0807 0.61 +0.1
883,401 - Psest_0807 0.61 -0.0
883,401 - Psest_0807 0.61 +0.0
883,401 - Psest_0807 0.61 +0.1
883,478 + Psest_0807 0.75 +1.1
883,478 + Psest_0807 0.75 -1.1
883,479 - Psest_0807 0.75 -1.9
883,479 - Psest_0807 0.75 -0.6
883,479 - Psest_0807 0.75 -0.6
883,479 - Psest_0807 0.75 -2.6
883,479 - Psest_0807 0.75 +0.2
883,711 + Psest_0808 0.24 -0.1
883,711 + Psest_0808 0.24 +0.5
883,740 - Psest_0808 0.31 -0.3
883,753 + Psest_0808 0.35 -0.2
883,754 - Psest_0808 0.35 +0.4
883,754 - Psest_0808 0.35 -1.4
883,796 + Psest_0808 0.46 +0.7
883,796 + Psest_0808 0.46 +0.4
883,797 - Psest_0808 0.46 -0.3
883,816 + Psest_0808 0.51 -1.8
883,816 + Psest_0808 0.51 -2.3
883,906 + Psest_0808 0.74 -0.3
883,906 + Psest_0808 0.74 -0.4
883,907 - Psest_0808 0.74 +1.2
883,907 - Psest_0808 0.74 +3.6
883,968 + Psest_0808 0.89 -0.5
883,968 + Psest_0808 0.89 -0.6
883,969 - Psest_0808 0.90 -0.5
883,969 - Psest_0808 0.90 +1.5
883,969 - Psest_0808 0.90 -0.3
883,969 - Psest_0808 0.90 -1.2
883,997 + +0.9
883,997 + -0.5
883,997 + -0.4
883,997 + -0.3
883,997 + -1.0
883,997 + +0.1
883,997 + +0.3
883,998 - +1.4
883,998 - -1.7
883,998 - +0.5
883,998 - -0.6
883,998 - +3.2
883,998 - +2.5
883,998 - +0.1
884,034 + +0.6

Or see this region's nucleotide sequence