Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0397 and Psest_0398 are separated by 115 nucleotides Psest_0398 and Psest_0399 are separated by 134 nucleotides
Psest_0397: Psest_0397 - Small-conductance mechanosensitive channel, at 427,475 to 430,765
_0397
Psest_0398: Psest_0398 - NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain, at 430,881 to 432,626
_0398
Psest_0399: Psest_0399 - Acyl-CoA dehydrogenases, at 432,761 to 434,575
_0399
Position (kb) 430
431
432
433 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 429.951 kb on + strand, within Psest_0397 at 430.471 kb on - strand at 430.690 kb on + strand at 430.882 kb on + strand at 431.252 kb on + strand, within Psest_0398 at 431.878 kb on + strand, within Psest_0398 at 431.878 kb on + strand, within Psest_0398 at 431.878 kb on + strand, within Psest_0398 at 431.878 kb on + strand, within Psest_0398 at 431.878 kb on + strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 431.879 kb on - strand, within Psest_0398 at 432.438 kb on - strand, within Psest_0398 at 432.687 kb on - strand at 432.741 kb on + strand at 432.750 kb on + strand at 432.750 kb on + strand at 432.750 kb on + strand at 432.750 kb on + strand at 432.751 kb on - strand at 432.751 kb on - strand at 432.762 kb on + strand at 432.762 kb on + strand at 432.762 kb on + strand at 432.763 kb on - strand at 432.763 kb on - strand at 432.858 kb on + strand at 432.858 kb on + strand at 432.859 kb on - strand at 432.859 kb on - strand at 432.886 kb on - strand at 432.886 kb on - strand at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.990 kb on + strand, within Psest_0399 at 432.991 kb on - strand, within Psest_0399 at 432.991 kb on - strand, within Psest_0399 at 433.272 kb on + strand, within Psest_0399 at 433.272 kb on + strand, within Psest_0399 at 433.273 kb on - strand, within Psest_0399 at 433.350 kb on + strand, within Psest_0399 at 433.350 kb on + strand, within Psest_0399 at 433.351 kb on - strand, within Psest_0399 at 433.351 kb on - strand, within Psest_0399 at 433.351 kb on - strand, within Psest_0399 at 433.351 kb on - strand, within Psest_0399 at 433.351 kb on - strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.494 kb on + strand, within Psest_0399 at 433.495 kb on - strand, within Psest_0399 at 433.495 kb on - strand, within Psest_0399 at 433.495 kb on - strand, within Psest_0399 at 433.495 kb on - strand, within Psest_0399 at 433.620 kb on + strand, within Psest_0399
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 429,951 + Psest_0397 0.75 -0.2 430,471 - -0.2 430,690 + +1.2 430,882 + +0.0 431,252 + Psest_0398 0.21 -2.3 431,878 + Psest_0398 0.57 -1.4 431,878 + Psest_0398 0.57 -2.2 431,878 + Psest_0398 0.57 -2.7 431,878 + Psest_0398 0.57 -2.8 431,878 + Psest_0398 0.57 -0.1 431,879 - Psest_0398 0.57 -1.0 431,879 - Psest_0398 0.57 -0.2 431,879 - Psest_0398 0.57 -2.6 431,879 - Psest_0398 0.57 +1.5 431,879 - Psest_0398 0.57 -2.4 431,879 - Psest_0398 0.57 -3.7 431,879 - Psest_0398 0.57 -2.0 431,879 - Psest_0398 0.57 -1.0 431,879 - Psest_0398 0.57 -1.8 432,438 - Psest_0398 0.89 -2.3 432,687 - +1.3 432,741 + -2.2 432,750 + -0.9 432,750 + +1.2 432,750 + +0.8 432,750 + +0.9 432,751 - +1.6 432,751 - -0.2 432,762 + +1.3 432,762 + +1.5 432,762 + -1.4 432,763 - +0.4 432,763 - -0.7 432,858 + -0.7 432,858 + +1.1 432,859 - -0.4 432,859 - +2.8 432,886 - +0.8 432,886 - -3.0 432,990 + Psest_0399 0.13 +0.9 432,990 + Psest_0399 0.13 -1.3 432,990 + Psest_0399 0.13 -0.7 432,990 + Psest_0399 0.13 +3.9 432,990 + Psest_0399 0.13 -0.7 432,990 + Psest_0399 0.13 +0.3 432,990 + Psest_0399 0.13 +1.0 432,990 + Psest_0399 0.13 -1.2 432,991 - Psest_0399 0.13 +0.6 432,991 - Psest_0399 0.13 -0.0 433,272 + Psest_0399 0.28 -0.6 433,272 + Psest_0399 0.28 +1.5 433,273 - Psest_0399 0.28 +0.3 433,350 + Psest_0399 0.32 +0.0 433,350 + Psest_0399 0.32 +0.2 433,351 - Psest_0399 0.33 +0.8 433,351 - Psest_0399 0.33 +0.9 433,351 - Psest_0399 0.33 +0.6 433,351 - Psest_0399 0.33 +1.1 433,351 - Psest_0399 0.33 +0.8 433,494 + Psest_0399 0.40 -0.9 433,494 + Psest_0399 0.40 +1.9 433,494 + Psest_0399 0.40 -0.7 433,494 + Psest_0399 0.40 -0.7 433,494 + Psest_0399 0.40 +0.4 433,494 + Psest_0399 0.40 +0.7 433,495 - Psest_0399 0.40 -0.2 433,495 - Psest_0399 0.40 -0.4 433,495 - Psest_0399 0.40 +1.4 433,495 - Psest_0399 0.40 -0.6 433,620 + Psest_0399 0.47 +2.2
Or see this region's nucleotide sequence