Experiment: Cholin acetate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3860 and Psest_3861 are separated by 159 nucleotides Psest_3861 and Psest_3862 are separated by 6 nucleotides Psest_3862 and Psest_3863 are separated by 24 nucleotides Psest_3863 and Psest_3864 are separated by 181 nucleotides
Psest_3860: Psest_3860 - Predicted permeases, at 4,031,508 to 4,032,290
_3860
Psest_3861: Psest_3861 - Uncharacterized conserved protein, at 4,032,450 to 4,033,206
_3861
Psest_3862: Psest_3862 - phosphoenolpyruvate-protein phosphotransferase, at 4,033,213 to 4,035,486
_3862
Psest_3863: Psest_3863 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 4,035,511 to 4,035,990
_3863
Psest_3864: Psest_3864 - Histidinol-phosphatase (EC:3.1.3.15) (from data) , at 4,036,172 to 4,036,825
_3864
Position (kb)
4033
4034
4035
4036 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4032.274 kb on + strand at 4032.274 kb on + strand at 4032.274 kb on + strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.275 kb on - strand at 4032.310 kb on + strand at 4032.415 kb on + strand at 4032.415 kb on + strand at 4032.416 kb on - strand at 4032.439 kb on + strand at 4032.440 kb on - strand at 4032.440 kb on - strand at 4032.712 kb on + strand, within Psest_3861 at 4032.712 kb on + strand, within Psest_3861 at 4032.712 kb on + strand, within Psest_3861 at 4032.713 kb on - strand, within Psest_3861 at 4032.713 kb on - strand, within Psest_3861 at 4032.743 kb on - strand, within Psest_3861 at 4032.775 kb on + strand, within Psest_3861 at 4032.776 kb on - strand, within Psest_3861 at 4032.776 kb on - strand, within Psest_3861 at 4032.776 kb on - strand, within Psest_3861 at 4032.776 kb on - strand, within Psest_3861 at 4033.069 kb on - strand, within Psest_3861 at 4033.278 kb on + strand at 4033.278 kb on + strand at 4033.279 kb on - strand at 4033.541 kb on + strand, within Psest_3862 at 4033.542 kb on - strand, within Psest_3862 at 4033.542 kb on - strand, within Psest_3862 at 4033.542 kb on - strand, within Psest_3862 at 4033.547 kb on + strand, within Psest_3862 at 4033.547 kb on + strand, within Psest_3862 at 4033.548 kb on - strand, within Psest_3862 at 4033.592 kb on + strand, within Psest_3862 at 4033.592 kb on + strand, within Psest_3862 at 4033.592 kb on + strand, within Psest_3862 at 4033.592 kb on + strand, within Psest_3862 at 4033.593 kb on - strand, within Psest_3862 at 4033.593 kb on - strand, within Psest_3862 at 4033.659 kb on - strand, within Psest_3862 at 4033.659 kb on - strand, within Psest_3862 at 4033.659 kb on - strand, within Psest_3862 at 4033.935 kb on - strand, within Psest_3862 at 4033.935 kb on - strand, within Psest_3862 at 4033.935 kb on - strand, within Psest_3862 at 4034.015 kb on + strand, within Psest_3862 at 4034.016 kb on - strand, within Psest_3862 at 4034.016 kb on - strand, within Psest_3862 at 4034.016 kb on - strand, within Psest_3862 at 4034.089 kb on + strand, within Psest_3862 at 4034.090 kb on - strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.200 kb on + strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.201 kb on - strand, within Psest_3862 at 4034.249 kb on + strand, within Psest_3862 at 4034.249 kb on + strand, within Psest_3862 at 4034.250 kb on - strand, within Psest_3862 at 4034.371 kb on - strand, within Psest_3862 at 4034.510 kb on + strand, within Psest_3862 at 4034.510 kb on + strand, within Psest_3862 at 4034.511 kb on - strand, within Psest_3862 at 4034.511 kb on - strand, within Psest_3862 at 4034.543 kb on + strand, within Psest_3862 at 4034.543 kb on + strand, within Psest_3862 at 4034.597 kb on + strand, within Psest_3862 at 4034.597 kb on + strand, within Psest_3862 at 4034.732 kb on + strand, within Psest_3862 at 4034.732 kb on + strand, within Psest_3862 at 4034.732 kb on + strand, within Psest_3862 at 4034.733 kb on - strand, within Psest_3862 at 4034.733 kb on - strand, within Psest_3862 at 4035.027 kb on + strand, within Psest_3862 at 4035.027 kb on + strand, within Psest_3862 at 4035.027 kb on + strand, within Psest_3862 at 4035.116 kb on - strand, within Psest_3862 at 4035.194 kb on + strand, within Psest_3862 at 4035.194 kb on + strand, within Psest_3862 at 4035.194 kb on + strand, within Psest_3862 at 4035.194 kb on + strand, within Psest_3862 at 4035.365 kb on + strand at 4035.365 kb on + strand at 4035.365 kb on + strand at 4035.365 kb on + strand at 4035.366 kb on - strand at 4035.996 kb on - strand at 4035.996 kb on - strand at 4036.042 kb on + strand at 4036.132 kb on + strand at 4036.186 kb on - strand at 4036.241 kb on + strand, within Psest_3864 at 4036.241 kb on + strand, within Psest_3864 at 4036.242 kb on - strand, within Psest_3864 at 4036.277 kb on + strand, within Psest_3864 at 4036.277 kb on + strand, within Psest_3864 at 4036.277 kb on + strand, within Psest_3864 at 4036.278 kb on - strand, within Psest_3864 at 4036.301 kb on + strand, within Psest_3864 at 4036.301 kb on + strand, within Psest_3864 at 4036.301 kb on + strand, within Psest_3864 at 4036.301 kb on + strand, within Psest_3864 at 4036.301 kb on + strand, within Psest_3864 at 4036.302 kb on - strand, within Psest_3864 at 4036.302 kb on - strand, within Psest_3864 at 4036.302 kb on - strand, within Psest_3864 at 4036.302 kb on - strand, within Psest_3864 at 4036.302 kb on - strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.310 kb on + strand, within Psest_3864 at 4036.311 kb on - strand, within Psest_3864
Per-strain Table
Position Strand Gene LocusTag Fraction Cholin acetate 40 mM remove 4,032,274 + -1.4 4,032,274 + -1.3 4,032,274 + -1.5 4,032,275 - +0.5 4,032,275 - -1.2 4,032,275 - -0.5 4,032,275 - -2.6 4,032,310 + +0.3 4,032,415 + +0.0 4,032,415 + +2.7 4,032,416 - +1.0 4,032,439 + -1.2 4,032,440 - -0.5 4,032,440 - -0.7 4,032,712 + Psest_3861 0.35 -0.1 4,032,712 + Psest_3861 0.35 +2.6 4,032,712 + Psest_3861 0.35 -0.5 4,032,713 - Psest_3861 0.35 -0.2 4,032,713 - Psest_3861 0.35 +0.4 4,032,743 - Psest_3861 0.39 -0.0 4,032,775 + Psest_3861 0.43 -1.0 4,032,776 - Psest_3861 0.43 -0.1 4,032,776 - Psest_3861 0.43 -1.2 4,032,776 - Psest_3861 0.43 -0.5 4,032,776 - Psest_3861 0.43 -0.9 4,033,069 - Psest_3861 0.82 -2.8 4,033,278 + -1.0 4,033,278 + -3.9 4,033,279 - -1.3 4,033,541 + Psest_3862 0.14 -3.8 4,033,542 - Psest_3862 0.14 -1.9 4,033,542 - Psest_3862 0.14 -2.1 4,033,542 - Psest_3862 0.14 -1.6 4,033,547 + Psest_3862 0.15 -3.3 4,033,547 + Psest_3862 0.15 -2.9 4,033,548 - Psest_3862 0.15 -3.2 4,033,592 + Psest_3862 0.17 -0.8 4,033,592 + Psest_3862 0.17 -1.4 4,033,592 + Psest_3862 0.17 -3.6 4,033,592 + Psest_3862 0.17 -2.6 4,033,593 - Psest_3862 0.17 -2.6 4,033,593 - Psest_3862 0.17 -3.4 4,033,659 - Psest_3862 0.20 -2.1 4,033,659 - Psest_3862 0.20 -3.1 4,033,659 - Psest_3862 0.20 -3.3 4,033,935 - Psest_3862 0.32 -2.7 4,033,935 - Psest_3862 0.32 -2.9 4,033,935 - Psest_3862 0.32 -2.6 4,034,015 + Psest_3862 0.35 -3.1 4,034,016 - Psest_3862 0.35 -2.1 4,034,016 - Psest_3862 0.35 -2.0 4,034,016 - Psest_3862 0.35 -1.9 4,034,089 + Psest_3862 0.39 -1.8 4,034,090 - Psest_3862 0.39 -0.3 4,034,200 + Psest_3862 0.43 -4.3 4,034,200 + Psest_3862 0.43 -4.6 4,034,200 + Psest_3862 0.43 -3.3 4,034,200 + Psest_3862 0.43 -1.3 4,034,200 + Psest_3862 0.43 -0.7 4,034,200 + Psest_3862 0.43 -1.6 4,034,200 + Psest_3862 0.43 -1.9 4,034,201 - Psest_3862 0.43 -3.2 4,034,201 - Psest_3862 0.43 -3.1 4,034,201 - Psest_3862 0.43 -2.8 4,034,201 - Psest_3862 0.43 -0.9 4,034,201 - Psest_3862 0.43 -2.3 4,034,201 - Psest_3862 0.43 -3.3 4,034,201 - Psest_3862 0.43 -2.2 4,034,201 - Psest_3862 0.43 -2.0 4,034,201 - Psest_3862 0.43 -2.1 4,034,249 + Psest_3862 0.46 -4.3 4,034,249 + Psest_3862 0.46 -1.3 4,034,250 - Psest_3862 0.46 -1.0 4,034,371 - Psest_3862 0.51 -3.2 4,034,510 + Psest_3862 0.57 -3.2 4,034,510 + Psest_3862 0.57 -3.0 4,034,511 - Psest_3862 0.57 -3.3 4,034,511 - Psest_3862 0.57 -1.0 4,034,543 + Psest_3862 0.58 -4.4 4,034,543 + Psest_3862 0.58 -1.3 4,034,597 + Psest_3862 0.61 -2.0 4,034,597 + Psest_3862 0.61 -0.5 4,034,732 + Psest_3862 0.67 -3.8 4,034,732 + Psest_3862 0.67 -2.6 4,034,732 + Psest_3862 0.67 -2.8 4,034,733 - Psest_3862 0.67 -1.8 4,034,733 - Psest_3862 0.67 -2.8 4,035,027 + Psest_3862 0.80 -2.3 4,035,027 + Psest_3862 0.80 -1.2 4,035,027 + Psest_3862 0.80 -2.6 4,035,116 - Psest_3862 0.84 -0.4 4,035,194 + Psest_3862 0.87 -2.8 4,035,194 + Psest_3862 0.87 -1.1 4,035,194 + Psest_3862 0.87 -1.5 4,035,194 + Psest_3862 0.87 -2.8 4,035,365 + -1.9 4,035,365 + -3.9 4,035,365 + -2.9 4,035,365 + -3.0 4,035,366 - -0.9 4,035,996 - +0.5 4,035,996 - -0.9 4,036,042 + +0.6 4,036,132 + -0.5 4,036,186 - +1.3 4,036,241 + Psest_3864 0.11 +0.8 4,036,241 + Psest_3864 0.11 +1.2 4,036,242 - Psest_3864 0.11 +0.5 4,036,277 + Psest_3864 0.16 +1.2 4,036,277 + Psest_3864 0.16 +1.1 4,036,277 + Psest_3864 0.16 +1.3 4,036,278 - Psest_3864 0.16 -0.3 4,036,301 + Psest_3864 0.20 -0.5 4,036,301 + Psest_3864 0.20 +1.8 4,036,301 + Psest_3864 0.20 -0.3 4,036,301 + Psest_3864 0.20 -0.6 4,036,301 + Psest_3864 0.20 +0.6 4,036,302 - Psest_3864 0.20 +0.6 4,036,302 - Psest_3864 0.20 -1.9 4,036,302 - Psest_3864 0.20 +0.6 4,036,302 - Psest_3864 0.20 -0.4 4,036,302 - Psest_3864 0.20 -2.1 4,036,310 + Psest_3864 0.21 +0.9 4,036,310 + Psest_3864 0.21 -1.7 4,036,310 + Psest_3864 0.21 -0.3 4,036,310 + Psest_3864 0.21 -0.4 4,036,311 - Psest_3864 0.21 -1.3
Or see this region's nucleotide sequence