Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2879

Experiment: Post-colonization (Day 8) - Cage5;Mouse3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage5;Mouse3
3,597,958	+		BT2878	0.32	+0.8
3,597,958	+		BT2878	0.32	-2.0
3,597,977	+		BT2878	0.33	-0.4
3,598,006	+		BT2878	0.35	-0.8
3,598,006	+		BT2878	0.35	-1.0
3,598,025	+		BT2878	0.36	-1.2
3,598,095	+		BT2878	0.41	-0.5
3,598,116	-		BT2878	0.43	-1.2
3,598,189	+		BT2878	0.48	-0.4
3,598,190	-		BT2878	0.48	+0.5
3,598,223	-		BT2878	0.50	+0.1
3,598,224	+		BT2878	0.50	-0.6
3,598,248	+		BT2878	0.52	-1.8
3,598,249	-		BT2878	0.52	-1.4
3,598,284	+		BT2878	0.54	-1.6
3,598,291	+		BT2878	0.55	-2.0
3,598,291	+		BT2878	0.55	-0.5
3,598,292	-		BT2878	0.55	+0.4
3,598,318	+		BT2878	0.57	-0.4
3,598,394	+		BT2878	0.62	-0.3
3,598,395	-		BT2878	0.62	-0.8
3,598,410	-		BT2878	0.63	-0.3
3,598,436	+		BT2878	0.65	-2.2
3,598,437	-		BT2878	0.65	-1.2
3,598,462	+		BT2878	0.67	-1.2
3,598,463	-		BT2878	0.67	-0.4
3,598,464	+		BT2878	0.67	-1.2
3,598,464	+		BT2878	0.67	-1.7
3,598,475	+		BT2878	0.68	-0.4
3,598,482	-		BT2878	0.68	-0.8
3,598,508	+		BT2878	0.70	-2.8
3,598,508	+		BT2878	0.70	-0.6
3,598,509	-		BT2878	0.70	-0.5
3,598,509	-		BT2878	0.70	-0.9
3,598,511	-		BT2878	0.70	-1.3
3,598,511	-		BT2878	0.70	-0.4
3,598,513	+		BT2878	0.70	+1.6
3,598,513	+		BT2878	0.70	-0.7
3,598,513	+		BT2878	0.70	+1.4
3,598,518	-		BT2878	0.71	+0.4
3,598,548	+		BT2878	0.73	-1.2
3,598,559	-		BT2878	0.73	-1.4
3,598,561	+		BT2878	0.74	-1.9
3,598,561	+		BT2878	0.74	-1.0
3,598,561	+		BT2878	0.74	+1.8
3,598,574	+		BT2878	0.74	-2.9
3,598,575	-		BT2878	0.75	-0.6
3,598,605	-		BT2878	0.77	-0.4
3,598,618	+		BT2878	0.78	-1.5
3,598,680	+		BT2878	0.82	-0.2
3,598,680	+		BT2878	0.82	-0.5
3,598,681	-		BT2878	0.82	-1.8
3,598,731	-		BT2878	0.85	-2.0
3,598,750	+		BT2878	0.87	-0.8
3,598,750	+		BT2878	0.87	-0.2
3,598,804	+				-2.0
3,598,824	-				-1.3
3,598,824	-				-2.6
3,598,828	+				-0.2
3,598,828	+				-1.3
3,598,828	+				+0.1
3,598,828	+				-0.5
3,598,828	+				-0.5
3,598,829	-				+0.4
3,598,829	-				-0.8
3,598,829	-				-1.8
3,598,829	-				+0.4
3,598,829	-				+3.0
3,598,908	-				+0.5
3,598,909	+				+0.8
3,598,955	-				-0.7
3,598,955	-				-1.8
3,599,009	-				-1.9
3,599,077	+				-1.4
3,599,084	+		BT2879	0.10	-2.2
3,599,102	-		BT2879	0.11	-1.1
3,599,106	+		BT2879	0.12	-2.0
3,599,150	+		BT2879	0.15	-0.6
3,599,150	+		BT2879	0.15	-0.8
3,599,163	-		BT2879	0.16	-2.3
3,599,196	+		BT2879	0.19	+0.8
3,599,225	-		BT2879	0.21	-0.3
3,599,247	-		BT2879	0.23	-1.2
3,599,256	+		BT2879	0.24	-2.3
3,599,257	-		BT2879	0.24	-0.8
3,599,309	+		BT2879	0.28	-1.5
3,599,309	+		BT2879	0.28	-2.9
3,599,357	+		BT2879	0.32	-0.5
3,599,394	-		BT2879	0.35	-0.8
3,599,397	+		BT2879	0.35	+0.2
3,599,398	-		BT2879	0.35	-2.1
3,599,402	-		BT2879	0.35	-1.8
3,599,431	-		BT2879	0.38	+0.6
3,599,449	+		BT2879	0.39	-1.3
3,599,490	+		BT2879	0.42	-1.1
3,599,495	-		BT2879	0.43	-2.0
3,599,571	+		BT2879	0.49	-0.4
3,599,589	+		BT2879	0.50	-1.8
3,599,589	+		BT2879	0.50	-1.1
3,599,589	+		BT2879	0.50	-0.9
3,599,623	+		BT2879	0.53	-2.0
3,599,641	+		BT2879	0.54	-0.5
3,599,641	+		BT2879	0.54	-0.2
3,599,642	-		BT2879	0.54	-0.8
3,599,646	+		BT2879	0.55	-1.4
3,599,688	+		BT2879	0.58	-2.2
3,599,689	-		BT2879	0.58	-1.0
3,599,689	-		BT2879	0.58	-2.8
3,599,728	-		BT2879	0.61	+0.8
3,599,761	+		BT2879	0.64	-2.5
3,599,761	+		BT2879	0.64	-1.5
3,599,762	-		BT2879	0.64	-0.2
3,599,767	-		BT2879	0.64	-1.5
3,599,778	-		BT2879	0.65	-1.5
3,599,816	+		BT2879	0.68	-0.4
3,599,817	-		BT2879	0.68	-1.1
3,599,829	+		BT2879	0.69	-0.8
3,599,841	+		BT2879	0.70	+1.6
3,599,913	-		BT2879	0.76	-0.4
3,599,918	+		BT2879	0.76	-2.0
3,599,923	-		BT2879	0.76	+0.2
3,599,923	-		BT2879	0.76	-1.8
3,600,019	-		BT2879	0.84	+0.2
3,600,027	+		BT2879	0.85	-1.3
3,600,055	-		BT2879	0.87	-0.7
3,600,127	+				-0.9
3,600,153	+				+0.2
3,600,167	+				-2.5
3,600,167	+				-0.8
3,600,171	+				-1.5
3,600,204	+				-0.9
3,600,205	-				-0.3
3,600,206	+				-0.5
3,600,207	-				+1.8
3,600,208	+				-0.8
3,600,210	+				-1.2
3,600,211	-				+0.0
3,600,230	+				-1.2
3,600,230	+				-0.0
3,600,238	+				-1.6
3,600,238	+				-1.7
3,600,239	-				+1.2
3,600,239	-				-0.8
3,600,310	+		BT2880	0.10	-2.0
3,600,310	+		BT2880	0.10	-1.3
3,600,326	+		BT2880	0.12	-1.1
3,600,327	-		BT2880	0.12	-1.0
3,600,327	-		BT2880	0.12	+0.7
3,600,331	+		BT2880	0.12	+0.8
3,600,418	+		BT2880	0.21	-1.5
3,600,444	-		BT2880	0.23	-0.6
3,600,444	-		BT2880	0.23	-0.3
3,600,445	+		BT2880	0.23	-0.3
3,600,446	-		BT2880	0.23	-0.5
3,600,446	-		BT2880	0.23	-1.3
3,600,448	+		BT2880	0.24	+0.6
3,600,449	-		BT2880	0.24	-1.2
3,600,449	-		BT2880	0.24	-0.8
3,600,450	+		BT2880	0.24	+1.8
3,600,450	+		BT2880	0.24	-1.8
3,600,451	-		BT2880	0.24	-0.4
3,600,484	-		BT2880	0.27	-0.8
3,600,484	-		BT2880	0.27	-1.4
3,600,513	+		BT2880	0.30	+0.4
3,600,572	+		BT2880	0.36	-0.8
3,600,630	+		BT2880	0.41	+1.2
3,600,650	+		BT2880	0.43	+0.4
3,600,652	+		BT2880	0.43	-0.6
3,600,652	+		BT2880	0.43	+0.9
3,600,653	-		BT2880	0.43	-1.2
3,600,799	-		BT2880	0.58	+0.8
3,600,799	-		BT2880	0.58	-3.1
3,600,819	+		BT2880	0.60	+0.2
3,600,821	+		BT2880	0.60	+0.1
3,600,833	+		BT2880	0.61	+0.5
3,600,852	+		BT2880	0.63	-1.3
3,600,879	-		BT2880	0.65	+0.8
3,600,880	+		BT2880	0.65	+0.3
3,600,950	-		BT2880	0.72	-1.6
3,600,950	-		BT2880	0.72	-2.1
3,600,950	-		BT2880	0.72	+0.2
3,600,950	-		BT2880	0.72	-1.7
3,600,967	+		BT2880	0.74	+0.1
3,601,002	-		BT2880	0.77	-0.5
3,601,002	-		BT2880	0.77	+0.5
3,601,002	-		BT2880	0.77	-1.0
3,601,077	+		BT2880	0.84	+0.2
3,601,078	-		BT2880	0.85	-0.5
3,601,078	-		BT2880	0.85	-1.2
3,601,079	+		BT2880	0.85	-2.0
3,601,080	-		BT2880	0.85	-1.1
3,601,114	+		BT2880	0.88	-0.9
3,601,168	+				+0.3