Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0667 and Psest_0668 are separated by 6 nucleotides Psest_0668 and Psest_0669 are separated by 85 nucleotides Psest_0669 and Psest_0670 are separated by 14 nucleotides
Psest_0667: Psest_0667 - Phosphodiesterase/alkaline phosphatase D, at 726,330 to 727,883
_0667
Psest_0668: Psest_0668 - Ethanolamine ammonia-lyase, small subunit, at 727,890 to 728,684
_0668
Psest_0669: Psest_0669 - Ethanolamine ammonia-lyase, large subunit, at 728,770 to 730,161
_0669
Psest_0670: Psest_0670 - ethanolamine permease, at 730,176 to 731,624
_0670
Position (kb) 728
729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 727.817 kb on - strand at 727.817 kb on - strand at 727.849 kb on - strand at 727.938 kb on + strand at 727.962 kb on + strand at 728.002 kb on + strand, within Psest_0668 at 728.002 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.029 kb on + strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.030 kb on - strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.110 kb on + strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.111 kb on - strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.434 kb on + strand, within Psest_0668 at 728.435 kb on - strand at 728.483 kb on + strand, within Psest_0668 at 728.483 kb on + strand, within Psest_0668 at 728.483 kb on + strand, within Psest_0668 at 728.484 kb on - strand, within Psest_0668 at 728.484 kb on - strand, within Psest_0668 at 728.688 kb on + strand at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.918 kb on + strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.919 kb on - strand, within Psest_0669 at 728.948 kb on + strand, within Psest_0669 at 729.066 kb on - strand, within Psest_0669 at 729.066 kb on - strand, within Psest_0669 at 729.152 kb on + strand, within Psest_0669 at 729.152 kb on + strand, within Psest_0669 at 729.153 kb on - strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.158 kb on + strand, within Psest_0669 at 729.159 kb on - strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.206 kb on + strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.207 kb on - strand, within Psest_0669 at 729.224 kb on + strand, within Psest_0669 at 729.305 kb on + strand, within Psest_0669 at 729.305 kb on + strand, within Psest_0669 at 729.306 kb on - strand, within Psest_0669 at 729.357 kb on - strand, within Psest_0669 at 729.357 kb on - strand, within Psest_0669 at 730.255 kb on + strand at 730.255 kb on + strand at 730.255 kb on + strand at 730.255 kb on + strand at 730.256 kb on - strand at 730.256 kb on - strand at 730.256 kb on - strand at 730.267 kb on + strand at 730.268 kb on - strand at 730.285 kb on + strand at 730.285 kb on + strand at 730.285 kb on + strand at 730.285 kb on + strand at 730.286 kb on - strand at 730.286 kb on - strand at 730.286 kb on - strand at 730.286 kb on - strand at 730.286 kb on - strand at 730.399 kb on + strand, within Psest_0670 at 730.462 kb on + strand, within Psest_0670 at 730.462 kb on + strand, within Psest_0670 at 730.462 kb on + strand, within Psest_0670 at 730.463 kb on - strand, within Psest_0670 at 730.463 kb on - strand, within Psest_0670 at 730.463 kb on - strand, within Psest_0670 at 730.463 kb on - strand, within Psest_0670 at 730.463 kb on - strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.651 kb on + strand, within Psest_0670 at 730.652 kb on - strand, within Psest_0670 at 730.652 kb on - strand, within Psest_0670 at 730.652 kb on - strand, within Psest_0670 at 730.652 kb on - strand, within Psest_0670 at 730.652 kb on - strand, within Psest_0670 at 730.839 kb on + strand, within Psest_0670 at 730.972 kb on + strand, within Psest_0670 at 730.978 kb on + strand, within Psest_0670 at 731.141 kb on + strand, within Psest_0670 at 731.142 kb on - strand, within Psest_0670 at 731.142 kb on - strand, within Psest_0670 at 731.142 kb on - strand, within Psest_0670
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 727,817 - -0.4 727,817 - -0.4 727,849 - +2.1 727,938 + -1.7 727,962 + -0.3 728,002 + Psest_0668 0.14 +0.8 728,002 + Psest_0668 0.14 -0.4 728,029 + Psest_0668 0.17 -0.1 728,029 + Psest_0668 0.17 -1.4 728,029 + Psest_0668 0.17 -2.6 728,029 + Psest_0668 0.17 +0.3 728,029 + Psest_0668 0.17 -0.0 728,029 + Psest_0668 0.17 +0.1 728,029 + Psest_0668 0.17 -0.1 728,030 - Psest_0668 0.18 +2.5 728,030 - Psest_0668 0.18 +0.5 728,030 - Psest_0668 0.18 +1.3 728,110 + Psest_0668 0.28 -0.1 728,110 + Psest_0668 0.28 +1.1 728,110 + Psest_0668 0.28 -0.4 728,110 + Psest_0668 0.28 +0.9 728,111 - Psest_0668 0.28 -0.5 728,111 - Psest_0668 0.28 +0.1 728,111 - Psest_0668 0.28 -0.7 728,111 - Psest_0668 0.28 +0.2 728,111 - Psest_0668 0.28 +0.3 728,434 + Psest_0668 0.68 +0.2 728,434 + Psest_0668 0.68 +0.5 728,434 + Psest_0668 0.68 -0.1 728,434 + Psest_0668 0.68 +1.5 728,435 - +0.0 728,483 + Psest_0668 0.75 +1.4 728,483 + Psest_0668 0.75 +1.5 728,483 + Psest_0668 0.75 +0.3 728,484 - Psest_0668 0.75 -1.0 728,484 - Psest_0668 0.75 -0.4 728,688 + -0.8 728,918 + Psest_0669 0.11 +0.4 728,918 + Psest_0669 0.11 +0.1 728,918 + Psest_0669 0.11 +1.0 728,918 + Psest_0669 0.11 -2.5 728,918 + Psest_0669 0.11 -1.3 728,918 + Psest_0669 0.11 -0.3 728,919 - Psest_0669 0.11 +0.4 728,919 - Psest_0669 0.11 -0.3 728,919 - Psest_0669 0.11 +1.2 728,919 - Psest_0669 0.11 +0.4 728,919 - Psest_0669 0.11 +0.3 728,948 + Psest_0669 0.13 -0.9 729,066 - Psest_0669 0.21 -0.2 729,066 - Psest_0669 0.21 +1.1 729,152 + Psest_0669 0.27 +1.6 729,152 + Psest_0669 0.27 -0.4 729,153 - Psest_0669 0.28 -1.3 729,158 + Psest_0669 0.28 -0.1 729,158 + Psest_0669 0.28 -0.2 729,158 + Psest_0669 0.28 -1.1 729,158 + Psest_0669 0.28 -1.6 729,159 - Psest_0669 0.28 -2.1 729,206 + Psest_0669 0.31 +0.4 729,206 + Psest_0669 0.31 -1.1 729,206 + Psest_0669 0.31 -0.6 729,206 + Psest_0669 0.31 -1.4 729,207 - Psest_0669 0.31 +0.3 729,207 - Psest_0669 0.31 -0.9 729,207 - Psest_0669 0.31 -1.2 729,224 + Psest_0669 0.33 -0.4 729,305 + Psest_0669 0.38 -0.5 729,305 + Psest_0669 0.38 -0.6 729,306 - Psest_0669 0.39 -2.4 729,357 - Psest_0669 0.42 -1.0 729,357 - Psest_0669 0.42 -1.9 730,255 + -0.5 730,255 + -1.7 730,255 + +0.6 730,255 + +0.4 730,256 - +1.7 730,256 - -0.8 730,256 - -0.3 730,267 + -2.0 730,268 - -2.1 730,285 + -1.3 730,285 + -1.6 730,285 + -0.3 730,285 + +0.9 730,286 - +0.7 730,286 - +0.2 730,286 - +0.6 730,286 - +0.2 730,286 - +0.0 730,399 + Psest_0670 0.15 -0.0 730,462 + Psest_0670 0.20 -1.3 730,462 + Psest_0670 0.20 -0.1 730,462 + Psest_0670 0.20 +0.1 730,463 - Psest_0670 0.20 +0.4 730,463 - Psest_0670 0.20 +0.7 730,463 - Psest_0670 0.20 +2.1 730,463 - Psest_0670 0.20 +0.3 730,463 - Psest_0670 0.20 +2.4 730,651 + Psest_0670 0.33 +1.3 730,651 + Psest_0670 0.33 +0.9 730,651 + Psest_0670 0.33 -0.4 730,651 + Psest_0670 0.33 -1.3 730,651 + Psest_0670 0.33 -2.5 730,651 + Psest_0670 0.33 -0.5 730,651 + Psest_0670 0.33 +0.3 730,652 - Psest_0670 0.33 -0.2 730,652 - Psest_0670 0.33 +1.6 730,652 - Psest_0670 0.33 -1.8 730,652 - Psest_0670 0.33 +0.2 730,652 - Psest_0670 0.33 +0.1 730,839 + Psest_0670 0.46 -0.2 730,972 + Psest_0670 0.55 -1.2 730,978 + Psest_0670 0.55 +0.7 731,141 + Psest_0670 0.67 -1.3 731,142 - Psest_0670 0.67 +0.5 731,142 - Psest_0670 0.67 +3.5 731,142 - Psest_0670 0.67 +0.3
Or see this region's nucleotide sequence