Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0333 and Psest_0334 are separated by 60 nucleotides Psest_0334 and Psest_0335 are separated by 319 nucleotides Psest_0335 and Psest_0336 are separated by 177 nucleotides Psest_0336 and Psest_0337 are separated by 92 nucleotides
Psest_0333: Psest_0333 - fructose-bisphosphate aldolase, class II, Calvin cycle subtype, at 356,117 to 357,181
_0333
Psest_0334: Psest_0334 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 357,242 to 357,622
_0334
Psest_0335: Psest_0335 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 357,942 to 358,556
_0335
Psest_0336: Psest_0336 - Protein of unknown function (DUF3509)., at 358,734 to 359,012
_0336
Psest_0337: Psest_0337 - Regulator of cell morphogenesis and NO signaling, at 359,105 to 359,578
_0337
Position (kb) 357
358
359 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 357.193 kb on - strand at 357.342 kb on + strand, within Psest_0334 at 357.342 kb on + strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.343 kb on - strand, within Psest_0334 at 357.571 kb on + strand, within Psest_0334 at 357.572 kb on - strand, within Psest_0334 at 357.642 kb on + strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.643 kb on - strand at 357.812 kb on + strand at 357.812 kb on + strand at 357.813 kb on - strand at 357.813 kb on - strand at 357.827 kb on - strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.925 kb on + strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.926 kb on - strand at 357.981 kb on + strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.982 kb on - strand at 357.984 kb on + strand at 357.985 kb on - strand at 358.156 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.312 kb on + strand, within Psest_0335 at 358.428 kb on + strand, within Psest_0335 at 358.429 kb on - strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.430 kb on + strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.431 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.449 kb on - strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.488 kb on + strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.489 kb on - strand, within Psest_0335 at 358.717 kb on + strand at 358.717 kb on + strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.718 kb on - strand at 358.757 kb on + strand at 358.994 kb on + strand at 358.995 kb on - strand at 358.995 kb on - strand at 358.998 kb on + strand at 358.998 kb on + strand at 358.998 kb on + strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 358.999 kb on - strand at 359.005 kb on - strand at 359.201 kb on - strand, within Psest_0337 at 359.237 kb on - strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.276 kb on + strand, within Psest_0337 at 359.277 kb on - strand, within Psest_0337 at 359.277 kb on - strand, within Psest_0337 at 359.312 kb on + strand, within Psest_0337 at 359.312 kb on + strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337 at 359.313 kb on - strand, within Psest_0337
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 357,193 - +0.9 357,342 + Psest_0334 0.26 -2.0 357,342 + Psest_0334 0.26 +0.1 357,343 - Psest_0334 0.27 -0.3 357,343 - Psest_0334 0.27 -2.0 357,343 - Psest_0334 0.27 -0.6 357,343 - Psest_0334 0.27 +0.8 357,571 + Psest_0334 0.86 +0.9 357,572 - Psest_0334 0.87 -1.4 357,642 + +1.4 357,643 - +0.2 357,643 - -1.1 357,643 - +1.7 357,643 - +1.7 357,643 - +2.7 357,812 + -3.0 357,812 + +0.4 357,813 - -0.9 357,813 - +0.2 357,827 - -0.4 357,925 + +0.4 357,925 + -0.8 357,925 + -0.4 357,925 + -0.8 357,926 - -0.7 357,926 - +0.4 357,926 - -0.2 357,981 + +0.9 357,982 - -0.9 357,982 - +0.1 357,982 - -1.2 357,982 - -0.6 357,982 - +0.7 357,984 + -1.4 357,985 - -0.7 358,156 + Psest_0335 0.35 -1.0 358,312 + Psest_0335 0.60 +1.1 358,312 + Psest_0335 0.60 +1.5 358,312 + Psest_0335 0.60 -1.9 358,428 + Psest_0335 0.79 +1.1 358,429 - Psest_0335 0.79 +2.1 358,430 + Psest_0335 0.79 +1.0 358,430 + Psest_0335 0.79 +1.9 358,430 + Psest_0335 0.79 +1.1 358,430 + Psest_0335 0.79 -0.5 358,430 + Psest_0335 0.79 +0.5 358,430 + Psest_0335 0.79 +2.2 358,431 - Psest_0335 0.80 +1.5 358,431 - Psest_0335 0.80 +0.7 358,431 - Psest_0335 0.80 -0.8 358,431 - Psest_0335 0.80 +1.0 358,449 - Psest_0335 0.82 +1.3 358,449 - Psest_0335 0.82 +1.9 358,488 + Psest_0335 0.89 +0.5 358,488 + Psest_0335 0.89 +0.6 358,488 + Psest_0335 0.89 -2.0 358,488 + Psest_0335 0.89 +1.2 358,488 + Psest_0335 0.89 +1.8 358,488 + Psest_0335 0.89 +1.0 358,488 + Psest_0335 0.89 +2.5 358,489 - Psest_0335 0.89 +0.8 358,489 - Psest_0335 0.89 +0.6 358,489 - Psest_0335 0.89 +0.9 358,717 + -0.6 358,717 + -1.8 358,718 - +0.6 358,718 - +1.1 358,718 - +0.1 358,718 - +2.2 358,757 + +1.3 358,994 + +0.5 358,995 - +1.2 358,995 - +3.0 358,998 + -2.1 358,998 + -1.5 358,998 + +1.5 358,999 - +1.9 358,999 - +2.3 358,999 - +4.0 358,999 - +1.1 358,999 - +1.4 358,999 - +2.5 358,999 - +2.4 359,005 - +0.8 359,201 - Psest_0337 0.20 +1.2 359,237 - Psest_0337 0.28 -0.6 359,276 + Psest_0337 0.36 +0.1 359,276 + Psest_0337 0.36 +0.7 359,276 + Psest_0337 0.36 +2.1 359,276 + Psest_0337 0.36 -1.4 359,276 + Psest_0337 0.36 +0.6 359,276 + Psest_0337 0.36 +0.4 359,277 - Psest_0337 0.36 +0.5 359,277 - Psest_0337 0.36 -0.0 359,312 + Psest_0337 0.44 -1.9 359,312 + Psest_0337 0.44 -0.1 359,313 - Psest_0337 0.44 -0.9 359,313 - Psest_0337 0.44 +1.4 359,313 - Psest_0337 0.44 +0.6 359,313 - Psest_0337 0.44 +1.1
Or see this region's nucleotide sequence