Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1694

Experiment: Choline chloride 90 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1692 and Psest_1693 overlap by 4 nucleotidesPsest_1693 and Psest_1694 overlap by 8 nucleotidesPsest_1694 and Psest_1695 are separated by 31 nucleotidesPsest_1695 and Psest_1696 are separated by 103 nucleotides Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811 _1692 Psest_1693: Psest_1693 - thymidylate kinase, at 1,800,808 to 1,801,440 _1693 Psest_1694: Psest_1694 - DNA polymerase III, delta' subunit, at 1,801,433 to 1,802,419 _1694 Psest_1695: Psest_1695 - Tfp pilus assembly protein PilZ, at 1,802,451 to 1,802,807 _1695 Psest_1696: Psest_1696 - hydrolase, TatD family, at 1,802,911 to 1,803,696 _1696 Position (kb) 1801 1802 1803Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.491 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.559 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.563 kb on + strand, within Psest_1692at 1800.656 kb on + strand, within Psest_1692at 1800.656 kb on + strand, within Psest_1692at 1800.731 kb on + strandat 1802.523 kb on + strand, within Psest_1695at 1802.583 kb on + strand, within Psest_1695at 1802.760 kb on + strand, within Psest_1695at 1802.760 kb on + strand, within Psest_1695at 1802.760 kb on + strand, within Psest_1695at 1802.760 kb on + strand, within Psest_1695at 1802.760 kb on + strand, within Psest_1695at 1802.761 kb on - strand, within Psest_1695at 1802.806 kb on - strandat 1802.900 kb on + strandat 1802.901 kb on - strandat 1802.901 kb on - strandat 1802.918 kb on + strandat 1802.918 kb on + strandat 1802.918 kb on + strandat 1802.919 kb on - strandat 1802.919 kb on - strandat 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.026 kb on + strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.027 kb on - strand, within Psest_1696at 1803.208 kb on + strand, within Psest_1696at 1803.208 kb on + strand, within Psest_1696at 1803.214 kb on + strand, within Psest_1696at 1803.286 kb on - strand, within Psest_1696at 1803.286 kb on - strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696at 1803.338 kb on + strand, within Psest_1696

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 90 mM
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1,800,491 + Psest_1692 0.70 -1.6
1,800,491 + Psest_1692 0.70 -2.7
1,800,491 + Psest_1692 0.70 +2.3
1,800,491 + Psest_1692 0.70 -2.4
1,800,491 + Psest_1692 0.70 +0.8
1,800,491 + Psest_1692 0.70 -0.5
1,800,491 + Psest_1692 0.70 -1.8
1,800,491 + Psest_1692 0.70 -0.7
1,800,491 + Psest_1692 0.70 -3.1
1,800,491 + Psest_1692 0.70 -1.6
1,800,491 + Psest_1692 0.70 -2.8
1,800,491 + Psest_1692 0.70 -1.2
1,800,491 + Psest_1692 0.70 -1.1
1,800,491 + Psest_1692 0.70 -1.4
1,800,491 + Psest_1692 0.70 -1.4
1,800,491 + Psest_1692 0.70 -1.9
1,800,559 + Psest_1692 0.76 -2.5
1,800,559 + Psest_1692 0.76 +0.3
1,800,559 + Psest_1692 0.76 -1.8
1,800,563 + Psest_1692 0.77 -1.9
1,800,563 + Psest_1692 0.77 +0.2
1,800,563 + Psest_1692 0.77 -2.4
1,800,563 + Psest_1692 0.77 -1.5
1,800,563 + Psest_1692 0.77 -0.2
1,800,563 + Psest_1692 0.77 -1.4
1,800,563 + Psest_1692 0.77 -1.2
1,800,656 + Psest_1692 0.85 -1.7
1,800,656 + Psest_1692 0.85 -1.4
1,800,731 + -2.0
1,802,523 + Psest_1695 0.20 +0.5
1,802,583 + Psest_1695 0.37 -0.5
1,802,760 + Psest_1695 0.87 -0.7
1,802,760 + Psest_1695 0.87 +1.2
1,802,760 + Psest_1695 0.87 +3.6
1,802,760 + Psest_1695 0.87 +0.5
1,802,760 + Psest_1695 0.87 +0.9
1,802,761 - Psest_1695 0.87 +1.5
1,802,806 - -0.8
1,802,900 + +1.1
1,802,901 - +0.9
1,802,901 - +0.2
1,802,918 + -0.4
1,802,918 + -0.0
1,802,918 + +1.3
1,802,919 - -1.2
1,802,919 - -1.2
1,803,026 + Psest_1696 0.15 -0.1
1,803,026 + Psest_1696 0.15 +0.0
1,803,026 + Psest_1696 0.15 +0.8
1,803,026 + Psest_1696 0.15 +0.0
1,803,026 + Psest_1696 0.15 -2.8
1,803,026 + Psest_1696 0.15 -1.8
1,803,026 + Psest_1696 0.15 +0.9
1,803,026 + Psest_1696 0.15 -1.1
1,803,026 + Psest_1696 0.15 -0.2
1,803,027 - Psest_1696 0.15 +0.4
1,803,027 - Psest_1696 0.15 +0.2
1,803,027 - Psest_1696 0.15 -0.4
1,803,027 - Psest_1696 0.15 +0.7
1,803,208 + Psest_1696 0.38 -1.6
1,803,208 + Psest_1696 0.38 -0.5
1,803,214 + Psest_1696 0.39 -0.3
1,803,286 - Psest_1696 0.48 +0.0
1,803,286 - Psest_1696 0.48 -1.2
1,803,338 + Psest_1696 0.54 +0.8
1,803,338 + Psest_1696 0.54 +1.3
1,803,338 + Psest_1696 0.54 +0.0

Or see this region's nucleotide sequence