Experiment: Choline chloride 90 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1692 and Psest_1693 overlap by 4 nucleotides Psest_1693 and Psest_1694 overlap by 8 nucleotides Psest_1694 and Psest_1695 are separated by 31 nucleotides Psest_1695 and Psest_1696 are separated by 103 nucleotides
Psest_1692: Psest_1692 - conserved hypothetical protein, YceG family, at 1,799,741 to 1,800,811
_1692
Psest_1693: Psest_1693 - thymidylate kinase, at 1,800,808 to 1,801,440
_1693
Psest_1694: Psest_1694 - DNA polymerase III, delta' subunit, at 1,801,433 to 1,802,419
_1694
Psest_1695: Psest_1695 - Tfp pilus assembly protein PilZ, at 1,802,451 to 1,802,807
_1695
Psest_1696: Psest_1696 - hydrolase, TatD family, at 1,802,911 to 1,803,696
_1696
Position (kb)
1801
1802
1803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.491 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.559 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.563 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.656 kb on + strand, within Psest_1692 at 1800.731 kb on + strand at 1802.523 kb on + strand, within Psest_1695 at 1802.583 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.760 kb on + strand, within Psest_1695 at 1802.761 kb on - strand, within Psest_1695 at 1802.806 kb on - strand at 1802.900 kb on + strand at 1802.901 kb on - strand at 1802.901 kb on - strand at 1802.918 kb on + strand at 1802.918 kb on + strand at 1802.918 kb on + strand at 1802.919 kb on - strand at 1802.919 kb on - strand at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.026 kb on + strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.027 kb on - strand, within Psest_1696 at 1803.208 kb on + strand, within Psest_1696 at 1803.208 kb on + strand, within Psest_1696 at 1803.214 kb on + strand, within Psest_1696 at 1803.286 kb on - strand, within Psest_1696 at 1803.286 kb on - strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696 at 1803.338 kb on + strand, within Psest_1696
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 90 mM remove 1,800,491 + Psest_1692 0.70 -1.6 1,800,491 + Psest_1692 0.70 -2.7 1,800,491 + Psest_1692 0.70 +2.3 1,800,491 + Psest_1692 0.70 -2.4 1,800,491 + Psest_1692 0.70 +0.8 1,800,491 + Psest_1692 0.70 -0.5 1,800,491 + Psest_1692 0.70 -1.8 1,800,491 + Psest_1692 0.70 -0.7 1,800,491 + Psest_1692 0.70 -3.1 1,800,491 + Psest_1692 0.70 -1.6 1,800,491 + Psest_1692 0.70 -2.8 1,800,491 + Psest_1692 0.70 -1.2 1,800,491 + Psest_1692 0.70 -1.1 1,800,491 + Psest_1692 0.70 -1.4 1,800,491 + Psest_1692 0.70 -1.4 1,800,491 + Psest_1692 0.70 -1.9 1,800,559 + Psest_1692 0.76 -2.5 1,800,559 + Psest_1692 0.76 +0.3 1,800,559 + Psest_1692 0.76 -1.8 1,800,563 + Psest_1692 0.77 -1.9 1,800,563 + Psest_1692 0.77 +0.2 1,800,563 + Psest_1692 0.77 -2.4 1,800,563 + Psest_1692 0.77 -1.5 1,800,563 + Psest_1692 0.77 -0.2 1,800,563 + Psest_1692 0.77 -1.4 1,800,563 + Psest_1692 0.77 -1.2 1,800,656 + Psest_1692 0.85 -1.7 1,800,656 + Psest_1692 0.85 -1.4 1,800,731 + -2.0 1,802,523 + Psest_1695 0.20 +0.5 1,802,583 + Psest_1695 0.37 -0.5 1,802,760 + Psest_1695 0.87 -0.7 1,802,760 + Psest_1695 0.87 +1.2 1,802,760 + Psest_1695 0.87 +3.6 1,802,760 + Psest_1695 0.87 +0.5 1,802,760 + Psest_1695 0.87 +0.9 1,802,761 - Psest_1695 0.87 +1.5 1,802,806 - -0.8 1,802,900 + +1.1 1,802,901 - +0.9 1,802,901 - +0.2 1,802,918 + -0.4 1,802,918 + -0.0 1,802,918 + +1.3 1,802,919 - -1.2 1,802,919 - -1.2 1,803,026 + Psest_1696 0.15 -0.1 1,803,026 + Psest_1696 0.15 +0.0 1,803,026 + Psest_1696 0.15 +0.8 1,803,026 + Psest_1696 0.15 +0.0 1,803,026 + Psest_1696 0.15 -2.8 1,803,026 + Psest_1696 0.15 -1.8 1,803,026 + Psest_1696 0.15 +0.9 1,803,026 + Psest_1696 0.15 -1.1 1,803,026 + Psest_1696 0.15 -0.2 1,803,027 - Psest_1696 0.15 +0.4 1,803,027 - Psest_1696 0.15 +0.2 1,803,027 - Psest_1696 0.15 -0.4 1,803,027 - Psest_1696 0.15 +0.7 1,803,208 + Psest_1696 0.38 -1.6 1,803,208 + Psest_1696 0.38 -0.5 1,803,214 + Psest_1696 0.39 -0.3 1,803,286 - Psest_1696 0.48 +0.0 1,803,286 - Psest_1696 0.48 -1.2 1,803,338 + Psest_1696 0.54 +0.8 1,803,338 + Psest_1696 0.54 +1.3 1,803,338 + Psest_1696 0.54 +0.0
Or see this region's nucleotide sequence