Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3159

Experiment: Post-colonization (Day 8) - Cage1;Mouse5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage1;Mouse5
4,026,346	-		BT3158	0.26	-0.5
4,026,348	+		BT3158	0.26	-2.2
4,026,389	-		BT3158	0.29	-2.2
4,026,406	-		BT3158	0.31	-0.7
4,026,422	+		BT3158	0.32	+1.3
4,026,422	+		BT3158	0.32	+0.0
4,026,423	-		BT3158	0.32	-0.9
4,026,450	+		BT3158	0.34	-1.0
4,026,451	-		BT3158	0.34	-2.2
4,026,451	-		BT3158	0.34	+0.0
4,026,474	-		BT3158	0.36	-0.5
4,026,474	-		BT3158	0.36	-0.9
4,026,474	-		BT3158	0.36	-2.4
4,026,477	+		BT3158	0.37	-2.2
4,026,478	-		BT3158	0.37	-2.2
4,026,481	+		BT3158	0.37	-1.1
4,026,482	-		BT3158	0.37	-1.3
4,026,484	+		BT3158	0.37	-0.3
4,026,504	-		BT3158	0.39	-0.3
4,026,552	+		BT3158	0.43	-1.1
4,026,553	-		BT3158	0.43	-1.0
4,026,559	+		BT3158	0.43	-1.1
4,026,559	+		BT3158	0.43	-0.2
4,026,566	+		BT3158	0.44	-1.0
4,026,648	+		BT3158	0.51	-0.7
4,026,649	-		BT3158	0.51	-0.9
4,026,650	+		BT3158	0.51	-1.2
4,026,672	-		BT3158	0.53	-2.6
4,026,696	-		BT3158	0.55	-1.4
4,026,748	+		BT3158	0.59	-1.3
4,026,748	+		BT3158	0.59	-1.4
4,026,750	+		BT3158	0.59	-0.0
4,026,750	+		BT3158	0.59	+0.3
4,026,750	+		BT3158	0.59	+0.3
4,026,751	-		BT3158	0.59	-0.7
4,026,752	-		BT3158	0.59	-0.8
4,026,787	-		BT3158	0.62	-1.7
4,026,807	+		BT3158	0.64	+1.7
4,026,808	-		BT3158	0.64	+0.3
4,026,822	-		BT3158	0.65	+0.3
4,026,898	-		BT3158	0.71	-1.9
4,026,934	+		BT3158	0.74	-1.1
4,026,935	-		BT3158	0.74	-0.4
4,026,938	+		BT3158	0.75	+0.3
4,026,938	+		BT3158	0.75	+1.3
4,026,938	+		BT3158	0.75	-0.7
4,026,939	-		BT3158	0.75	+0.3
4,026,939	-		BT3158	0.75	-0.2
4,026,941	+		BT3158	0.75	+0.5
4,026,941	+				-0.3
4,026,942	-		BT3158	0.75	-2.1
4,026,945	-		BT3158	0.75	+0.8
4,026,993	+		BT3158	0.79	-1.7
4,027,093	+		BT3158	0.88	+0.3
4,027,094	-		BT3158	0.88	-0.1
4,027,096	-		BT3158	0.88	-0.5
4,027,100	+		BT3158	0.88	-0.2
4,027,101	-		BT3158	0.88	+0.3
4,027,106	-		BT3158	0.89	-2.0
4,027,106	-		BT3158	0.89	-1.2
4,027,138	+				-1.1
4,027,154	+				-0.7
4,027,154	+				-2.5
4,027,205	-				+0.3
4,027,278	+				-1.3
4,027,279	-				-0.3
4,027,349	-				-0.4
4,027,349	-				+1.3
4,027,372	+				-0.9
4,027,444	+		BT3159	0.14	-0.7
4,027,444	+		BT3159	0.14	-0.1
4,027,445	-		BT3159	0.14	-0.6
4,027,451	+		BT3159	0.14	-0.7
4,027,523	+		BT3159	0.20	+0.8
4,027,524	-		BT3159	0.20	-1.5
4,027,606	+		BT3159	0.26	+0.3
4,027,606	+		BT3159	0.26	-1.7
4,027,607	-		BT3159	0.27	+1.0
4,027,630	-		BT3159	0.28	-0.7
4,027,643	+		BT3159	0.29	-1.1
4,027,643	+		BT3159	0.29	+0.3
4,027,667	+		BT3159	0.31	-0.9
4,027,669	+		BT3159	0.31	-0.1
4,027,669	+		BT3159	0.31	-1.8
4,027,702	-		BT3159	0.34	-0.3
4,027,704	+		BT3159	0.34	+0.3
4,027,704	+		BT3159	0.34	+0.3
4,027,757	+		BT3159	0.38	+1.7
4,027,758	-		BT3159	0.38	+1.5
4,027,784	+		BT3159	0.40	-0.6
4,027,785	-		BT3159	0.40	-0.6
4,027,802	+		BT3159	0.42	-1.4
4,027,805	+		BT3159	0.42	-1.2
4,027,805	+		BT3159	0.42	-0.9
4,027,823	-		BT3159	0.43	-0.0
4,027,823	-		BT3159	0.43	+0.4
4,027,823	-		BT3159	0.43	-0.3
4,027,875	+		BT3159	0.47	+1.3
4,027,876	-		BT3159	0.47	+0.3
4,027,896	+		BT3159	0.49	-1.5
4,027,897	-		BT3159	0.49	-3.2
4,027,918	+		BT3159	0.51	+0.2
4,027,923	+		BT3159	0.51	-0.3
4,027,923	+		BT3159	0.51	-0.1
4,027,923	+		BT3159	0.51	-0.9
4,027,926	+		BT3159	0.51	+0.1
4,027,926	+		BT3159	0.51	-0.9
4,027,926	+		BT3159	0.51	-2.5
4,027,927	-		BT3159	0.51	-0.9
4,027,928	+		BT3159	0.51	-1.9
4,027,928	+		BT3159	0.51	+0.5
4,027,928	+		BT3159	0.51	-1.3
4,027,928	+		BT3159	0.51	-0.8
4,027,928	+		BT3159	0.51	+0.9
4,027,929	-		BT3159	0.51	-0.3
4,027,930	+		BT3159	0.52	-0.3
4,027,963	+		BT3159	0.54	-0.7
4,027,975	-		BT3159	0.55	-1.1
4,028,024	+		BT3159	0.59	-1.2
4,028,036	-		BT3159	0.60	-0.5
4,028,036	-		BT3159	0.60	-2.0
4,028,040	+		BT3159	0.60	-0.8
4,028,075	+		BT3159	0.63	+0.7
4,028,075	+		BT3159	0.63	+0.7
4,028,076	-		BT3159	0.63	-0.6
4,028,165	-		BT3159	0.70	-1.5
4,028,244	+		BT3159	0.76	-1.1
4,028,245	-		BT3159	0.76	-0.7
4,028,249	+		BT3159	0.76	-0.7
4,028,263	+		BT3159	0.77	-1.1
4,028,298	+		BT3159	0.80	-0.6
4,028,320	-		BT3159	0.82	+0.0
4,028,333	+		BT3159	0.83	+1.3
4,028,396	-		BT3159	0.88	-0.6
4,028,419	-		BT3159	0.89	-0.4
4,028,419	-		BT3159	0.89	+0.3
4,028,422	-		BT3159	0.90	-1.1
4,028,424	+		BT3159	0.90	-1.0
4,028,439	-				-0.5
4,028,444	+				-1.1
4,028,454	-				+0.5
4,028,473	-				+0.7
4,028,486	+				-1.6
4,028,490	-				+1.1
4,028,490	-				-1.1
4,028,490	-				-1.0
4,028,509	-				+0.5
4,028,517	-				-1.6
4,028,524	-				-1.8
4,028,532	-				+0.3
4,028,546	+				-1.5
4,028,570	-				-0.3
4,028,578	-				-0.7
4,028,578	-				+2.3
4,028,592	-				-0.0
4,028,625	+				-1.3
4,028,643	-				-1.3
4,028,646	-				-0.7
4,028,646	-				-1.7
4,028,661	-				-2.6
4,028,668	-				-0.4
4,028,672	-				-1.1
4,028,706	+				-1.9
4,028,710	+				-1.1
4,028,710	+				-0.6
4,028,787	+				-1.5
4,028,810	+				-1.1
4,028,810	+				+1.7
4,028,821	-				-0.9
4,028,821	-				-2.6
4,028,828	-				+0.3
4,028,933	+		BT3160	0.14	-1.2
4,028,933	+		BT3160	0.14	+0.5
4,028,934	-		BT3160	0.14	-2.3
4,028,934	-		BT3160	0.14	-1.0
4,028,940	+		BT3160	0.14	-0.7
4,028,941	-		BT3160	0.14	+0.0
4,028,958	+		BT3160	0.15	-0.5
4,028,958	+		BT3160	0.15	+1.3
4,028,959	-		BT3160	0.15	-0.3
4,028,961	+		BT3160	0.15	+1.3
4,029,001	-		BT3160	0.18	-1.3
4,029,013	+		BT3160	0.18	-1.6
4,029,058	+		BT3160	0.21	-1.1
4,029,059	-		BT3160	0.21	+1.3
4,029,080	+		BT3160	0.22	-1.1
4,029,080	+		BT3160	0.22	-0.5
4,029,087	+		BT3160	0.23	-0.6
4,029,088	-		BT3160	0.23	-1.1
4,029,097	+		BT3160	0.23	-0.8
4,029,098	-		BT3160	0.23	-0.6
4,029,123	+		BT3160	0.25	+0.3
4,029,123	+		BT3160	0.25	+0.3
4,029,124	-		BT3160	0.25	-2.2
4,029,293	-		BT3160	0.35	-1.3
4,029,298	-		BT3160	0.35	-0.5
4,029,307	+		BT3160	0.36	-0.3
4,029,341	-		BT3160	0.37	-1.1
4,029,341	-		BT3160	0.37	-1.5
4,029,444	+		BT3160	0.44	-0.8
4,029,451	+		BT3160	0.44	-2.3
4,029,452	-		BT3160	0.44	-0.0
4,029,453	+		BT3160	0.44	+0.5
4,029,457	+		BT3160	0.44	-3.3
4,029,458	-		BT3160	0.44	-0.1
4,029,458	-		BT3160	0.44	-1.1
4,029,459	+		BT3160	0.44	-0.5
4,029,460	-		BT3160	0.44	-2.0
4,029,460	-		BT3160	0.44	+1.7
4,029,460	-		BT3160	0.44	-2.6
4,029,479	-		BT3160	0.46	+0.3
4,029,499	-		BT3160	0.47	+1.3
4,029,531	+				-1.5
4,029,553	-		BT3160	0.50	-0.7
4,029,556	-		BT3160	0.50	-1.7