Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0802

Experiment: syringaldehyde 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0801 and Psest_0802 are separated by 10 nucleotidesPsest_0802 and Psest_0803 are separated by 70 nucleotidesPsest_0803 and Psest_0804 are separated by 8 nucleotides Psest_0801: Psest_0801 - CBS-domain-containing membrane protein, at 875,814 to 876,950 _0801 Psest_0802: Psest_0802 - Transcriptional regulator, at 876,961 to 877,821 _0802 Psest_0803: Psest_0803 - prepilin-type N-terminal cleavage/methylation domain, at 877,892 to 878,419 _0803 Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445 _0804 Position (kb) 876 877 878Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 876.303 kb on + strand, within Psest_0801at 876.303 kb on + strand, within Psest_0801at 876.303 kb on + strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.304 kb on - strand, within Psest_0801at 876.444 kb on + strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.445 kb on - strand, within Psest_0801at 876.558 kb on + strand, within Psest_0801at 876.558 kb on + strand, within Psest_0801at 876.559 kb on - strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.819 kb on + strand, within Psest_0801at 876.820 kb on - strand, within Psest_0801at 876.820 kb on - strand, within Psest_0801at 876.972 kb on - strandat 877.073 kb on + strand, within Psest_0802at 877.074 kb on - strand, within Psest_0802at 877.074 kb on - strand, within Psest_0802at 877.082 kb on + strand, within Psest_0802at 877.160 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.218 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.289 kb on + strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.290 kb on - strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.295 kb on + strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.296 kb on - strand, within Psest_0802at 877.374 kb on - strand, within Psest_0802at 877.495 kb on + strand, within Psest_0802at 877.622 kb on + strand, within Psest_0802at 877.622 kb on + strand, within Psest_0802at 877.623 kb on - strand, within Psest_0802at 877.743 kb on + strandat 877.743 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.855 kb on + strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.856 kb on - strandat 877.883 kb on + strandat 877.884 kb on - strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.887 kb on + strandat 877.888 kb on - strandat 877.888 kb on - strandat 878.016 kb on - strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.262 kb on + strand, within Psest_0803at 878.263 kb on - strand, within Psest_0803at 878.263 kb on - strand, within Psest_0803at 878.263 kb on - strand, within Psest_0803at 878.263 kb on - strand, within Psest_0803at 878.298 kb on + strand, within Psest_0803at 878.393 kb on + strandat 878.393 kb on + strandat 878.429 kb on + strandat 878.430 kb on - strandat 878.430 kb on - strandat 878.430 kb on - strandat 878.484 kb on + strandat 878.484 kb on + strandat 878.484 kb on + strandat 878.484 kb on + strandat 878.485 kb on - strandat 878.619 kb on - strandat 878.635 kb on + strandat 878.639 kb on + strandat 878.639 kb on + strandat 878.639 kb on + strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.640 kb on - strandat 878.650 kb on - strandat 878.651 kb on + strandat 878.651 kb on + strandat 878.651 kb on + strandat 878.652 kb on - strandat 878.652 kb on - strandat 878.652 kb on - strandat 878.652 kb on - strandat 878.652 kb on - strandat 878.784 kb on - strand, within Psest_0804at 878.784 kb on - strand, within Psest_0804at 878.784 kb on - strand, within Psest_0804at 878.784 kb on - strand, within Psest_0804

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 4 mM
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876,303 + Psest_0801 0.43 -0.9
876,303 + Psest_0801 0.43 -1.5
876,303 + Psest_0801 0.43 +0.7
876,304 - Psest_0801 0.43 +0.7
876,304 - Psest_0801 0.43 +0.8
876,304 - Psest_0801 0.43 +1.2
876,304 - Psest_0801 0.43 -0.6
876,304 - Psest_0801 0.43 -0.2
876,304 - Psest_0801 0.43 -0.4
876,444 + Psest_0801 0.55 +0.2
876,445 - Psest_0801 0.55 -1.3
876,445 - Psest_0801 0.55 -0.7
876,445 - Psest_0801 0.55 -0.0
876,558 + Psest_0801 0.65 +0.8
876,558 + Psest_0801 0.65 -0.1
876,559 - Psest_0801 0.66 +1.5
876,819 + Psest_0801 0.88 +2.4
876,819 + Psest_0801 0.88 -0.5
876,819 + Psest_0801 0.88 -0.6
876,820 - Psest_0801 0.88 +1.4
876,820 - Psest_0801 0.88 -1.1
876,972 - -0.1
877,073 + Psest_0802 0.13 +2.2
877,074 - Psest_0802 0.13 +1.0
877,074 - Psest_0802 0.13 -1.9
877,082 + Psest_0802 0.14 +0.2
877,160 + Psest_0802 0.23 -0.2
877,218 + Psest_0802 0.30 -0.6
877,218 + Psest_0802 0.30 +3.4
877,218 + Psest_0802 0.30 -0.5
877,218 + Psest_0802 0.30 +0.1
877,289 + Psest_0802 0.38 +1.0
877,289 + Psest_0802 0.38 -0.4
877,289 + Psest_0802 0.38 +2.7
877,289 + Psest_0802 0.38 -0.5
877,289 + Psest_0802 0.38 +1.1
877,289 + Psest_0802 0.38 -0.5
877,290 - Psest_0802 0.38 -0.6
877,290 - Psest_0802 0.38 +0.2
877,290 - Psest_0802 0.38 -0.0
877,290 - Psest_0802 0.38 +1.0
877,290 - Psest_0802 0.38 -0.2
877,290 - Psest_0802 0.38 +1.0
877,290 - Psest_0802 0.38 +0.4
877,290 - Psest_0802 0.38 -0.5
877,290 - Psest_0802 0.38 +0.3
877,290 - Psest_0802 0.38 +2.1
877,295 + Psest_0802 0.39 -0.9
877,295 + Psest_0802 0.39 +1.4
877,295 + Psest_0802 0.39 +2.1
877,295 + Psest_0802 0.39 -1.1
877,295 + Psest_0802 0.39 +0.0
877,295 + Psest_0802 0.39 -0.7
877,296 - Psest_0802 0.39 +1.2
877,296 - Psest_0802 0.39 +2.0
877,296 - Psest_0802 0.39 +0.9
877,374 - Psest_0802 0.48 +0.7
877,495 + Psest_0802 0.62 +0.7
877,622 + Psest_0802 0.77 +0.1
877,622 + Psest_0802 0.77 +0.0
877,623 - Psest_0802 0.77 -0.5
877,743 + +0.1
877,743 + +0.2
877,855 + -0.1
877,855 + +0.4
877,855 + +2.0
877,855 + -1.2
877,856 - +0.1
877,856 - -0.7
877,856 - +0.5
877,856 - -0.5
877,883 + -0.1
877,884 - -2.3
877,887 + +0.6
877,887 + +1.5
877,887 + -0.2
877,887 + -2.0
877,887 + -0.7
877,888 - -0.4
877,888 - +0.2
878,016 - Psest_0803 0.23 -0.9
878,262 + Psest_0803 0.70 -2.9
878,262 + Psest_0803 0.70 -1.3
878,262 + Psest_0803 0.70 +1.2
878,262 + Psest_0803 0.70 -1.5
878,262 + Psest_0803 0.70 +0.1
878,262 + Psest_0803 0.70 +0.4
878,262 + Psest_0803 0.70 -1.1
878,263 - Psest_0803 0.70 -1.1
878,263 - Psest_0803 0.70 -0.3
878,263 - Psest_0803 0.70 -3.0
878,263 - Psest_0803 0.70 +0.0
878,298 + Psest_0803 0.77 -1.1
878,393 + -1.8
878,393 + +1.1
878,429 + -0.1
878,430 - -0.4
878,430 - +1.3
878,430 - -0.8
878,484 + +0.6
878,484 + -0.0
878,484 + -1.0
878,484 + +1.3
878,485 - +0.8
878,619 - -1.6
878,635 + +0.5
878,639 + -0.2
878,639 + +0.9
878,639 + +1.4
878,640 - +0.9
878,640 - +1.2
878,640 - +1.3
878,640 - -1.2
878,640 - -0.3
878,640 - +0.3
878,640 - -2.8
878,640 - -0.8
878,650 - -0.6
878,651 + -1.5
878,651 + -0.0
878,651 + +1.3
878,652 - +0.1
878,652 - -1.3
878,652 - +0.5
878,652 - -0.4
878,652 - +0.9
878,784 - Psest_0804 0.12 -0.6
878,784 - Psest_0804 0.12 -0.1
878,784 - Psest_0804 0.12 +0.2
878,784 - Psest_0804 0.12 +0.7

Or see this region's nucleotide sequence