Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0795

Experiment: syringaldehyde 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0794 and Psest_0795 overlap by 4 nucleotidesPsest_0795 and Psest_0796 overlap by 4 nucleotidesPsest_0796 and Psest_0797 are separated by 25 nucleotides Psest_0794: Psest_0794 - parallel beta-helix repeat (two copies), at 869,216 to 870,526 _0794 Psest_0795: Psest_0795 - ABC-type multidrug transport system, ATPase component, at 870,523 to 871,449 _0795 Psest_0796: Psest_0796 - ABC-type transport system involved in multi-copper enzyme maturation, permease component, at 871,446 to 872,276 _0796 Psest_0797: Psest_0797 - Predicted lipoprotein involved in nitrous oxide reduction, at 872,302 to 872,874 _0797 Position (kb) 870 871 872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 869.610 kb on + strand, within Psest_0794at 869.764 kb on + strand, within Psest_0794at 869.764 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.768 kb on + strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.769 kb on - strand, within Psest_0794at 869.777 kb on - strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.837 kb on + strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.838 kb on - strand, within Psest_0794at 869.898 kb on - strand, within Psest_0794at 869.960 kb on + strand, within Psest_0794at 869.961 kb on - strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.978 kb on + strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.979 kb on - strand, within Psest_0794at 869.987 kb on + strand, within Psest_0794at 869.987 kb on + strand, within Psest_0794at 869.987 kb on + strand, within Psest_0794at 869.988 kb on - strand, within Psest_0794at 869.988 kb on - strand, within Psest_0794at 869.998 kb on - strand, within Psest_0794at 870.086 kb on + strand, within Psest_0794at 870.086 kb on + strand, within Psest_0794at 870.087 kb on - strand, within Psest_0794at 870.087 kb on - strand, within Psest_0794at 870.087 kb on - strand, within Psest_0794at 870.087 kb on - strand, within Psest_0794at 870.087 kb on - strand, within Psest_0794at 870.143 kb on - strand, within Psest_0794at 870.175 kb on + strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.176 kb on - strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.218 kb on + strand, within Psest_0794at 870.219 kb on - strand, within Psest_0794at 870.219 kb on - strand, within Psest_0794at 870.219 kb on - strand, within Psest_0794at 870.219 kb on - strand, within Psest_0794at 870.219 kb on - strand, within Psest_0794at 870.250 kb on - strand, within Psest_0794at 870.266 kb on + strand, within Psest_0794at 870.267 kb on - strand, within Psest_0794at 870.279 kb on - strand, within Psest_0794at 870.279 kb on - strand, within Psest_0794at 870.279 kb on - strand, within Psest_0794at 870.324 kb on - strand, within Psest_0794at 870.362 kb on + strand, within Psest_0794at 870.548 kb on + strandat 870.548 kb on + strandat 870.779 kb on - strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.907 kb on + strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 870.908 kb on - strand, within Psest_0795at 871.024 kb on + strand, within Psest_0795at 871.399 kb on + strandat 871.400 kb on - strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.402 kb on + strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.403 kb on - strandat 871.668 kb on + strand, within Psest_0796at 871.722 kb on + strand, within Psest_0796at 871.929 kb on + strand, within Psest_0796at 871.929 kb on + strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 871.930 kb on - strand, within Psest_0796at 872.107 kb on - strand, within Psest_0796at 872.302 kb on - strandat 872.302 kb on - strandat 872.302 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 4 mM
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869,610 + Psest_0794 0.30 -1.6
869,764 + Psest_0794 0.42 +0.7
869,764 + Psest_0794 0.42 +0.3
869,768 + Psest_0794 0.42 -0.5
869,768 + Psest_0794 0.42 -0.6
869,768 + Psest_0794 0.42 -0.8
869,768 + Psest_0794 0.42 +0.4
869,768 + Psest_0794 0.42 +0.8
869,768 + Psest_0794 0.42 +0.9
869,768 + Psest_0794 0.42 +0.0
869,768 + Psest_0794 0.42 -1.8
869,768 + Psest_0794 0.42 -1.1
869,768 + Psest_0794 0.42 +1.3
869,768 + Psest_0794 0.42 +0.1
869,768 + Psest_0794 0.42 -1.0
869,768 + Psest_0794 0.42 +1.0
869,768 + Psest_0794 0.42 +1.7
869,768 + Psest_0794 0.42 -0.4
869,768 + Psest_0794 0.42 -0.3
869,768 + Psest_0794 0.42 -1.6
869,768 + Psest_0794 0.42 -1.0
869,769 - Psest_0794 0.42 +0.2
869,769 - Psest_0794 0.42 +0.5
869,769 - Psest_0794 0.42 +0.8
869,769 - Psest_0794 0.42 +1.6
869,769 - Psest_0794 0.42 -0.1
869,769 - Psest_0794 0.42 -1.1
869,769 - Psest_0794 0.42 +0.0
869,769 - Psest_0794 0.42 -0.9
869,769 - Psest_0794 0.42 -0.9
869,769 - Psest_0794 0.42 -0.2
869,769 - Psest_0794 0.42 -0.1
869,769 - Psest_0794 0.42 -0.8
869,769 - Psest_0794 0.42 -1.9
869,769 - Psest_0794 0.42 +4.4
869,769 - Psest_0794 0.42 -0.8
869,769 - Psest_0794 0.42 -0.8
869,769 - Psest_0794 0.42 -1.1
869,769 - Psest_0794 0.42 -1.6
869,769 - Psest_0794 0.42 +0.5
869,769 - Psest_0794 0.42 -0.7
869,769 - Psest_0794 0.42 -0.7
869,769 - Psest_0794 0.42 +0.9
869,777 - Psest_0794 0.43 -0.4
869,837 + Psest_0794 0.47 +1.5
869,837 + Psest_0794 0.47 -2.7
869,837 + Psest_0794 0.47 +0.7
869,837 + Psest_0794 0.47 -3.0
869,837 + Psest_0794 0.47 +1.4
869,837 + Psest_0794 0.47 +1.4
869,837 + Psest_0794 0.47 +1.1
869,837 + Psest_0794 0.47 +0.3
869,837 + Psest_0794 0.47 -0.4
869,838 - Psest_0794 0.47 +1.3
869,838 - Psest_0794 0.47 -0.8
869,838 - Psest_0794 0.47 -0.8
869,838 - Psest_0794 0.47 +0.3
869,838 - Psest_0794 0.47 +1.2
869,838 - Psest_0794 0.47 -0.4
869,838 - Psest_0794 0.47 -1.3
869,838 - Psest_0794 0.47 +0.1
869,838 - Psest_0794 0.47 -0.2
869,838 - Psest_0794 0.47 -0.4
869,838 - Psest_0794 0.47 -0.1
869,838 - Psest_0794 0.47 -0.1
869,838 - Psest_0794 0.47 +0.9
869,838 - Psest_0794 0.47 -0.1
869,838 - Psest_0794 0.47 -1.1
869,838 - Psest_0794 0.47 +0.2
869,838 - Psest_0794 0.47 +0.4
869,838 - Psest_0794 0.47 -2.1
869,838 - Psest_0794 0.47 -0.2
869,838 - Psest_0794 0.47 +0.9
869,838 - Psest_0794 0.47 +0.1
869,838 - Psest_0794 0.47 -0.5
869,898 - Psest_0794 0.52 +0.6
869,960 + Psest_0794 0.57 +0.6
869,961 - Psest_0794 0.57 -1.2
869,978 + Psest_0794 0.58 +0.9
869,978 + Psest_0794 0.58 +1.9
869,978 + Psest_0794 0.58 +0.3
869,978 + Psest_0794 0.58 -1.3
869,978 + Psest_0794 0.58 -1.3
869,978 + Psest_0794 0.58 +0.8
869,978 + Psest_0794 0.58 -1.0
869,978 + Psest_0794 0.58 -2.1
869,978 + Psest_0794 0.58 -0.3
869,978 + Psest_0794 0.58 -0.5
869,978 + Psest_0794 0.58 -1.7
869,979 - Psest_0794 0.58 +0.4
869,979 - Psest_0794 0.58 +0.2
869,979 - Psest_0794 0.58 -1.1
869,979 - Psest_0794 0.58 -0.4
869,979 - Psest_0794 0.58 -1.4
869,979 - Psest_0794 0.58 -0.4
869,979 - Psest_0794 0.58 -0.4
869,987 + Psest_0794 0.59 -0.1
869,987 + Psest_0794 0.59 -0.9
869,987 + Psest_0794 0.59 -0.1
869,988 - Psest_0794 0.59 +1.9
869,988 - Psest_0794 0.59 +1.3
869,998 - Psest_0794 0.60 +0.9
870,086 + Psest_0794 0.66 -0.9
870,086 + Psest_0794 0.66 +0.2
870,087 - Psest_0794 0.66 +2.3
870,087 - Psest_0794 0.66 -0.3
870,087 - Psest_0794 0.66 +1.3
870,087 - Psest_0794 0.66 -0.4
870,087 - Psest_0794 0.66 -1.5
870,143 - Psest_0794 0.71 -0.1
870,175 + Psest_0794 0.73 -1.0
870,176 - Psest_0794 0.73 -1.0
870,176 - Psest_0794 0.73 -0.1
870,176 - Psest_0794 0.73 -0.5
870,176 - Psest_0794 0.73 -0.1
870,176 - Psest_0794 0.73 -0.4
870,176 - Psest_0794 0.73 +0.7
870,218 + Psest_0794 0.76 +0.2
870,218 + Psest_0794 0.76 -1.5
870,218 + Psest_0794 0.76 -1.3
870,218 + Psest_0794 0.76 +0.7
870,218 + Psest_0794 0.76 -0.7
870,218 + Psest_0794 0.76 -1.6
870,218 + Psest_0794 0.76 +2.1
870,218 + Psest_0794 0.76 +1.0
870,218 + Psest_0794 0.76 +0.3
870,218 + Psest_0794 0.76 +1.0
870,218 + Psest_0794 0.76 -2.0
870,218 + Psest_0794 0.76 +1.6
870,218 + Psest_0794 0.76 -0.6
870,219 - Psest_0794 0.77 +1.1
870,219 - Psest_0794 0.77 -1.0
870,219 - Psest_0794 0.77 +0.2
870,219 - Psest_0794 0.77 +0.1
870,219 - Psest_0794 0.77 -0.7
870,250 - Psest_0794 0.79 -1.7
870,266 + Psest_0794 0.80 +1.7
870,267 - Psest_0794 0.80 +0.8
870,279 - Psest_0794 0.81 +1.5
870,279 - Psest_0794 0.81 -1.0
870,279 - Psest_0794 0.81 -1.8
870,324 - Psest_0794 0.85 -2.7
870,362 + Psest_0794 0.87 +0.1
870,548 + -0.5
870,548 + -0.9
870,779 - Psest_0795 0.28 -1.7
870,907 + Psest_0795 0.41 +0.5
870,907 + Psest_0795 0.41 -1.1
870,907 + Psest_0795 0.41 -1.7
870,908 - Psest_0795 0.42 -1.1
870,908 - Psest_0795 0.42 -1.8
870,908 - Psest_0795 0.42 -0.1
871,024 + Psest_0795 0.54 -1.7
871,399 + -0.3
871,400 - -0.5
871,402 + +0.6
871,402 + +0.4
871,402 + -0.4
871,402 + +1.2
871,402 + +0.9
871,402 + +0.9
871,402 + +0.5
871,403 - -0.2
871,403 - -0.5
871,403 - -0.3
871,403 - +0.3
871,403 - +1.4
871,403 - -1.5
871,403 - -0.4
871,403 - -0.2
871,668 + Psest_0796 0.27 +0.5
871,722 + Psest_0796 0.33 +0.3
871,929 + Psest_0796 0.58 -0.7
871,929 + Psest_0796 0.58 +0.3
871,930 - Psest_0796 0.58 +1.4
871,930 - Psest_0796 0.58 -1.2
871,930 - Psest_0796 0.58 +0.6
872,107 - Psest_0796 0.80 +1.7
872,302 - +1.8
872,302 - +0.7
872,302 - +2.0

Or see this region's nucleotide sequence