Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0723 and Psest_0724 are separated by 156 nucleotides Psest_0724 and Psest_0725 are separated by 104 nucleotides Psest_0725 and Psest_0726 are separated by 16 nucleotides
Psest_0723: Psest_0723 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 792,717 to 793,706
_0723
Psest_0724: Psest_0724 - Deoxyinosine 3'endonuclease (endonuclease V), at 793,863 to 794,591
_0724
Psest_0725: Psest_0725 - Negative regulator of beta-lactamase expression, at 794,696 to 795,247
_0725
Psest_0726: Psest_0726 - Membrane protein required for beta-lactamase induction, at 795,264 to 796,100
_0726
Position (kb) 794
795
796 Strain fitness (log2 ratio) -2
-1
0
1
2 at 793.714 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.718 kb on + strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 793.719 kb on - strand at 794.008 kb on - strand, within Psest_0724 at 794.121 kb on + strand, within Psest_0724 at 794.121 kb on + strand, within Psest_0724 at 794.121 kb on + strand, within Psest_0724 at 794.121 kb on + strand, within Psest_0724 at 794.122 kb on - strand, within Psest_0724 at 794.122 kb on - strand, within Psest_0724 at 794.266 kb on + strand, within Psest_0724 at 794.395 kb on + strand, within Psest_0724 at 794.605 kb on + strand at 794.781 kb on + strand, within Psest_0725 at 794.781 kb on + strand, within Psest_0725 at 794.793 kb on + strand, within Psest_0725 at 794.794 kb on - strand, within Psest_0725 at 794.794 kb on - strand, within Psest_0725 at 795.055 kb on + strand, within Psest_0725 at 795.238 kb on + strand at 795.239 kb on - strand at 795.239 kb on - strand at 795.415 kb on + strand, within Psest_0726 at 795.519 kb on + strand, within Psest_0726 at 795.519 kb on + strand, within Psest_0726 at 795.520 kb on - strand, within Psest_0726 at 795.520 kb on - strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.690 kb on + strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.691 kb on - strand, within Psest_0726 at 795.854 kb on - strand, within Psest_0726 at 795.859 kb on + strand, within Psest_0726 at 795.934 kb on + strand, within Psest_0726 at 795.934 kb on + strand, within Psest_0726 at 795.934 kb on + strand, within Psest_0726 at 795.934 kb on + strand, within Psest_0726 at 795.934 kb on + strand, within Psest_0726 at 795.935 kb on - strand, within Psest_0726 at 795.935 kb on - strand, within Psest_0726 at 796.045 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 793,714 + -0.7 793,718 + -1.5 793,718 + +1.5 793,718 + +0.6 793,718 + +0.2 793,718 + +0.5 793,718 + -2.3 793,718 + +0.9 793,718 + -0.6 793,718 + -0.3 793,718 + +0.4 793,719 - +1.6 793,719 - +1.8 793,719 - +1.5 793,719 - +1.1 793,719 - +0.5 793,719 - -0.5 793,719 - +1.6 793,719 - -0.8 794,008 - Psest_0724 0.20 -0.3 794,121 + Psest_0724 0.35 -0.3 794,121 + Psest_0724 0.35 +0.4 794,121 + Psest_0724 0.35 +0.3 794,121 + Psest_0724 0.35 +1.5 794,122 - Psest_0724 0.36 -0.3 794,122 - Psest_0724 0.36 +0.7 794,266 + Psest_0724 0.55 +0.8 794,395 + Psest_0724 0.73 +0.1 794,605 + -0.6 794,781 + Psest_0725 0.15 +0.3 794,781 + Psest_0725 0.15 -1.5 794,793 + Psest_0725 0.18 -1.2 794,794 - Psest_0725 0.18 -0.9 794,794 - Psest_0725 0.18 -0.7 795,055 + Psest_0725 0.65 -0.7 795,238 + -2.2 795,239 - +1.3 795,239 - +1.5 795,415 + Psest_0726 0.18 +0.4 795,519 + Psest_0726 0.30 -0.7 795,519 + Psest_0726 0.30 -0.7 795,520 - Psest_0726 0.31 +0.3 795,520 - Psest_0726 0.31 -0.3 795,690 + Psest_0726 0.51 -1.3 795,690 + Psest_0726 0.51 +1.7 795,690 + Psest_0726 0.51 -0.6 795,690 + Psest_0726 0.51 +1.0 795,690 + Psest_0726 0.51 -0.6 795,690 + Psest_0726 0.51 +2.2 795,690 + Psest_0726 0.51 +0.6 795,690 + Psest_0726 0.51 +0.2 795,690 + Psest_0726 0.51 +0.2 795,690 + Psest_0726 0.51 -0.4 795,690 + Psest_0726 0.51 -0.0 795,691 - Psest_0726 0.51 -0.4 795,691 - Psest_0726 0.51 -0.3 795,691 - Psest_0726 0.51 +1.0 795,691 - Psest_0726 0.51 +0.5 795,691 - Psest_0726 0.51 -0.3 795,691 - Psest_0726 0.51 +1.2 795,691 - Psest_0726 0.51 +0.1 795,854 - Psest_0726 0.70 -0.4 795,859 + Psest_0726 0.71 +0.0 795,934 + Psest_0726 0.80 +0.2 795,934 + Psest_0726 0.80 +0.0 795,934 + Psest_0726 0.80 +0.3 795,934 + Psest_0726 0.80 -0.4 795,934 + Psest_0726 0.80 -0.6 795,935 - Psest_0726 0.80 -0.5 795,935 - Psest_0726 0.80 -0.5 796,045 + +0.6
Or see this region's nucleotide sequence