Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0495

Experiment: syringaldehyde 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0493 and Psest_0494 are separated by 11 nucleotidesPsest_0494 and Psest_0495 are separated by 47 nucleotidesPsest_0495 and Psest_0496 are separated by 164 nucleotides Psest_0493: Psest_0493 - phosphatidylserine decarboxylase precursor, at 547,623 to 548,522 _0493 Psest_0494: Psest_0494 - Rhodanese-related sulfurtransferase, at 548,534 to 549,349 _0494 Psest_0495: Psest_0495 - HDOD domain., at 549,397 to 550,911 _0495 Psest_0496: Psest_0496 - flagellar motor stator protein MotA, at 551,076 to 551,927 _0496 Position (kb) 549 550 551Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 548.589 kb on + strandat 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.632 kb on - strand, within Psest_0494at 548.736 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 548.893 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.091 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.100 kb on - strand, within Psest_0494at 549.370 kb on - strandat 549.370 kb on - strandat 549.370 kb on - strandat 549.370 kb on - strandat 549.668 kb on - strand, within Psest_0495at 549.668 kb on - strand, within Psest_0495at 549.668 kb on - strand, within Psest_0495at 549.668 kb on - strand, within Psest_0495at 549.668 kb on - strand, within Psest_0495at 549.832 kb on + strand, within Psest_0495at 549.832 kb on + strand, within Psest_0495at 549.832 kb on + strand, within Psest_0495at 549.832 kb on + strand, within Psest_0495at 549.832 kb on + strand, within Psest_0495at 550.064 kb on + strand, within Psest_0495at 550.064 kb on + strand, within Psest_0495at 550.064 kb on + strand, within Psest_0495at 550.064 kb on + strand, within Psest_0495at 550.065 kb on - strand, within Psest_0495at 550.065 kb on - strand, within Psest_0495at 550.065 kb on - strand, within Psest_0495at 550.727 kb on - strand, within Psest_0495at 550.892 kb on - strandat 551.069 kb on + strandat 551.069 kb on + strandat 551.070 kb on - strandat 551.070 kb on - strandat 551.075 kb on + strandat 551.075 kb on + strandat 551.075 kb on + strandat 551.075 kb on + strandat 551.076 kb on - strandat 551.293 kb on - strand, within Psest_0496at 551.293 kb on - strand, within Psest_0496at 551.293 kb on - strand, within Psest_0496at 551.295 kb on + strand, within Psest_0496at 551.295 kb on + strand, within Psest_0496at 551.295 kb on + strand, within Psest_0496at 551.320 kb on - strand, within Psest_0496at 551.409 kb on + strand, within Psest_0496at 551.409 kb on + strand, within Psest_0496at 551.410 kb on - strand, within Psest_0496at 551.410 kb on - strand, within Psest_0496at 551.410 kb on - strand, within Psest_0496at 551.457 kb on + strand, within Psest_0496at 551.457 kb on + strand, within Psest_0496at 551.458 kb on - strand, within Psest_0496at 551.458 kb on - strand, within Psest_0496at 551.458 kb on - strand, within Psest_0496at 551.673 kb on + strand, within Psest_0496at 551.725 kb on - strand, within Psest_0496at 551.725 kb on - strand, within Psest_0496at 551.725 kb on - strand, within Psest_0496

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 4 mM
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548,589 + +2.3
548,632 - Psest_0494 0.12 -0.7
548,632 - Psest_0494 0.12 +0.5
548,632 - Psest_0494 0.12 +0.5
548,632 - Psest_0494 0.12 -1.3
548,632 - Psest_0494 0.12 -0.3
548,736 - Psest_0494 0.25 +1.2
548,893 - Psest_0494 0.44 +0.4
548,893 - Psest_0494 0.44 +0.0
548,893 - Psest_0494 0.44 -1.5
548,893 - Psest_0494 0.44 +0.7
548,893 - Psest_0494 0.44 -0.9
548,893 - Psest_0494 0.44 +1.1
548,893 - Psest_0494 0.44 +0.6
548,893 - Psest_0494 0.44 -0.7
548,893 - Psest_0494 0.44 -0.2
548,893 - Psest_0494 0.44 -0.5
548,893 - Psest_0494 0.44 -0.1
548,893 - Psest_0494 0.44 -2.5
548,893 - Psest_0494 0.44 +1.0
548,893 - Psest_0494 0.44 -0.1
548,893 - Psest_0494 0.44 +0.2
548,893 - Psest_0494 0.44 +0.3
548,893 - Psest_0494 0.44 +0.2
549,091 - Psest_0494 0.68 -0.4
549,091 - Psest_0494 0.68 +0.1
549,091 - Psest_0494 0.68 -1.9
549,100 - Psest_0494 0.69 -1.4
549,100 - Psest_0494 0.69 -0.2
549,100 - Psest_0494 0.69 +3.1
549,370 - +0.3
549,370 - +0.0
549,370 - -0.7
549,370 - -0.9
549,668 - Psest_0495 0.18 -0.3
549,668 - Psest_0495 0.18 +0.1
549,668 - Psest_0495 0.18 -1.0
549,668 - Psest_0495 0.18 -0.2
549,668 - Psest_0495 0.18 +0.3
549,832 + Psest_0495 0.29 +0.2
549,832 + Psest_0495 0.29 +0.3
549,832 + Psest_0495 0.29 -0.0
549,832 + Psest_0495 0.29 -1.3
549,832 + Psest_0495 0.29 +1.5
550,064 + Psest_0495 0.44 -0.4
550,064 + Psest_0495 0.44 +0.9
550,064 + Psest_0495 0.44 +0.1
550,064 + Psest_0495 0.44 -0.3
550,065 - Psest_0495 0.44 +0.3
550,065 - Psest_0495 0.44 -0.8
550,065 - Psest_0495 0.44 -2.4
550,727 - Psest_0495 0.88 -2.5
550,892 - +3.4
551,069 + +3.3
551,069 + -0.6
551,070 - -0.8
551,070 - +0.1
551,075 + -0.1
551,075 + +2.3
551,075 + +0.8
551,075 + -1.7
551,076 - +0.3
551,293 - Psest_0496 0.25 +0.7
551,293 - Psest_0496 0.25 -0.2
551,293 - Psest_0496 0.25 -0.3
551,295 + Psest_0496 0.26 +2.7
551,295 + Psest_0496 0.26 +2.3
551,295 + Psest_0496 0.26 +0.3
551,320 - Psest_0496 0.29 +1.2
551,409 + Psest_0496 0.39 +0.4
551,409 + Psest_0496 0.39 -0.3
551,410 - Psest_0496 0.39 +1.4
551,410 - Psest_0496 0.39 +0.8
551,410 - Psest_0496 0.39 +1.1
551,457 + Psest_0496 0.45 -2.8
551,457 + Psest_0496 0.45 -0.5
551,458 - Psest_0496 0.45 -0.4
551,458 - Psest_0496 0.45 +1.9
551,458 - Psest_0496 0.45 +1.3
551,673 + Psest_0496 0.70 +2.7
551,725 - Psest_0496 0.76 +0.8
551,725 - Psest_0496 0.76 +2.3
551,725 - Psest_0496 0.76 +2.0

Or see this region's nucleotide sequence