Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4001

Experiment: syringaldehyde 4 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 4 mM
4,172,894	-				-0.6
4,172,894	-				-2.6
4,172,940	+				+1.2
4,172,940	+				+1.7
4,172,940	+				-2.3
4,172,974	+				+1.4
4,172,975	-				+1.4
4,172,975	-				+0.6
4,172,975	-				-0.4
4,173,035	-				+1.1
4,173,109	+		Psest_4001	0.14	+0.3
4,173,110	-		Psest_4001	0.14	+0.2
4,173,359	+		Psest_4001	0.36	-1.5
4,173,359	+		Psest_4001	0.36	-2.5
4,173,359	+		Psest_4001	0.36	+0.3
4,173,360	-		Psest_4001	0.36	-1.3
4,173,360	-		Psest_4001	0.36	-0.7
4,173,360	-		Psest_4001	0.36	+0.2
4,173,414	+		Psest_4001	0.41	-2.4
4,173,415	-		Psest_4001	0.41	-0.1
4,173,437	-		Psest_4001	0.43	-0.4
4,173,558	-		Psest_4001	0.53	+0.1
4,173,913	+		Psest_4001	0.84	-0.4
4,174,109	-				+2.3
4,174,109	-				+0.9
4,174,109	-				+0.5
4,174,127	+				+1.9
4,174,215	+				+1.1
4,174,215	+				+0.9
4,174,215	+				-1.2
4,174,215	+				+0.1
4,174,216	-				-0.3
4,174,942	+		Psest_4002	0.56	-1.4