Experiment: syringaldehyde 4 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1358 and Psest_1359 are separated by 134 nucleotides Psest_1359 and Psest_1360 are separated by 108 nucleotides Psest_1360 and Psest_1361 overlap by 4 nucleotides Psest_1361 and Psest_1362 overlap by 8 nucleotides
Psest_1358: Psest_1358 - Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases, at 1,468,242 to 1,469,489
_1358
Psest_1359: Psest_1359 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 1,469,624 to 1,470,067
_1359
Psest_1360: Psest_1360 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 1,470,176 to 1,471,153
_1360
Psest_1361: Psest_1361 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 1,471,150 to 1,471,911
_1361
Psest_1362: Psest_1362 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 1,471,904 to 1,472,548
_1362
Position (kb)
1470
1471
1472 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1469.362 kb on + strand, within Psest_1358 at 1469.362 kb on + strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.363 kb on - strand, within Psest_1358 at 1469.589 kb on + strand at 1469.590 kb on - strand at 1469.642 kb on + strand at 1469.642 kb on + strand at 1469.642 kb on + strand at 1469.694 kb on - strand, within Psest_1359 at 1469.718 kb on + strand, within Psest_1359 at 1469.718 kb on + strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1469.719 kb on - strand, within Psest_1359 at 1470.136 kb on + strand at 1470.136 kb on + strand at 1470.137 kb on - strand at 1470.137 kb on - strand at 1470.137 kb on - strand at 1470.165 kb on - strand at 1470.336 kb on + strand, within Psest_1360 at 1470.336 kb on + strand, within Psest_1360 at 1470.336 kb on + strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.337 kb on - strand, within Psest_1360 at 1470.769 kb on + strand, within Psest_1360 at 1471.474 kb on + strand, within Psest_1361 at 1471.474 kb on + strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.475 kb on - strand, within Psest_1361 at 1471.764 kb on + strand, within Psest_1361 at 1471.764 kb on + strand, within Psest_1361 at 1471.764 kb on + strand, within Psest_1361 at 1471.804 kb on + strand, within Psest_1361
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 4 mM remove 1,469,362 + Psest_1358 0.90 +0.0 1,469,362 + Psest_1358 0.90 -1.0 1,469,363 - Psest_1358 0.90 -2.8 1,469,363 - Psest_1358 0.90 +0.2 1,469,363 - Psest_1358 0.90 +0.5 1,469,363 - Psest_1358 0.90 -0.2 1,469,363 - Psest_1358 0.90 +0.1 1,469,589 + -0.3 1,469,590 - +0.0 1,469,642 + -2.3 1,469,642 + +0.4 1,469,642 + -1.0 1,469,694 - Psest_1359 0.16 -0.4 1,469,718 + Psest_1359 0.21 +1.0 1,469,718 + Psest_1359 0.21 -0.1 1,469,719 - Psest_1359 0.21 +0.1 1,469,719 - Psest_1359 0.21 +0.5 1,469,719 - Psest_1359 0.21 +0.6 1,469,719 - Psest_1359 0.21 +0.2 1,469,719 - Psest_1359 0.21 +1.2 1,469,719 - Psest_1359 0.21 +0.2 1,470,136 + -1.9 1,470,136 + -0.0 1,470,137 - +0.2 1,470,137 - -1.0 1,470,137 - +0.7 1,470,165 - +3.1 1,470,336 + Psest_1360 0.16 +2.0 1,470,336 + Psest_1360 0.16 -2.1 1,470,336 + Psest_1360 0.16 +0.9 1,470,337 - Psest_1360 0.16 +1.5 1,470,337 - Psest_1360 0.16 -1.5 1,470,337 - Psest_1360 0.16 -0.1 1,470,769 + Psest_1360 0.61 +0.7 1,471,474 + Psest_1361 0.43 -1.4 1,471,474 + Psest_1361 0.43 +0.7 1,471,475 - Psest_1361 0.43 +0.0 1,471,475 - Psest_1361 0.43 -0.5 1,471,475 - Psest_1361 0.43 -0.6 1,471,475 - Psest_1361 0.43 +0.6 1,471,475 - Psest_1361 0.43 -0.2 1,471,475 - Psest_1361 0.43 -0.2 1,471,764 + Psest_1361 0.81 +0.2 1,471,764 + Psest_1361 0.81 +1.6 1,471,764 + Psest_1361 0.81 -1.5 1,471,804 + Psest_1361 0.86 +1.5
Or see this region's nucleotide sequence