Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0132

Experiment: syringaldehyde 4 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0130 and Psest_0131 are separated by 11 nucleotidesPsest_0131 and Psest_0132 are separated by 4 nucleotidesPsest_0132 and Psest_0133 are separated by 26 nucleotidesPsest_0133 and Psest_0134 are separated by 16 nucleotides Psest_0130: Psest_0130 - Uncharacterized conserved protein, at 128,434 to 130,356 _0130 Psest_0131: Psest_0131 - type VI secretion system lysozyme-related protein, at 130,368 to 130,775 _0131 Psest_0132: Psest_0132 - type VI secretion protein, EvpB/VC_A0108 family, at 130,780 to 132,258 _0132 Psest_0133: Psest_0133 - type VI secretion protein, VC_A0107 family, at 132,285 to 132,791 _0133 Psest_0134: Psest_0134 - type VI secretion-associated protein, VC_A0119 family, at 132,808 to 134,370 _0134 Position (kb) 130 131 132 133Strain fitness (log2 ratio) -2 -1 0 1 2at 129.944 kb on - strand, within Psest_0130at 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.832 kb on + strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.833 kb on - strandat 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.936 kb on + strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 130.937 kb on - strand, within Psest_0132at 131.057 kb on + strand, within Psest_0132at 131.057 kb on + strand, within Psest_0132at 131.088 kb on - strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.111 kb on + strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.112 kb on - strand, within Psest_0132at 131.250 kb on - strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.423 kb on + strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.424 kb on - strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.444 kb on + strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.445 kb on - strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.477 kb on + strand, within Psest_0132at 131.478 kb on - strand, within Psest_0132at 131.556 kb on - strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.729 kb on + strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.730 kb on - strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.771 kb on + strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.772 kb on - strand, within Psest_0132at 131.817 kb on - strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.828 kb on + strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.829 kb on - strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.840 kb on + strand, within Psest_0132at 131.841 kb on - strand, within Psest_0132at 131.841 kb on - strand, within Psest_0132at 132.152 kb on + strandat 132.152 kb on + strandat 132.152 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.260 kb on + strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.261 kb on - strandat 132.283 kb on + strandat 132.283 kb on + strandat 132.361 kb on - strand, within Psest_0133at 132.361 kb on - strand, within Psest_0133at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.016 kb on + strand, within Psest_0134at 133.017 kb on - strand, within Psest_0134at 133.017 kb on - strand, within Psest_0134

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 4 mM
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129,944 - Psest_0130 0.79 -0.4
130,832 + -0.0
130,832 + +0.5
130,832 + +1.7
130,832 + +0.5
130,832 + -1.7
130,832 + +1.2
130,833 - -0.9
130,833 - -0.8
130,833 - -1.0
130,833 - +0.3
130,833 - +0.1
130,833 - -0.7
130,833 - -2.4
130,833 - +0.9
130,833 - -2.4
130,936 + Psest_0132 0.11 -0.8
130,936 + Psest_0132 0.11 +0.7
130,936 + Psest_0132 0.11 -0.5
130,936 + Psest_0132 0.11 +0.5
130,936 + Psest_0132 0.11 +0.6
130,936 + Psest_0132 0.11 -0.8
130,937 - Psest_0132 0.11 -1.7
130,937 - Psest_0132 0.11 +1.2
130,937 - Psest_0132 0.11 -2.2
130,937 - Psest_0132 0.11 -0.0
130,937 - Psest_0132 0.11 +0.6
130,937 - Psest_0132 0.11 +1.5
131,057 + Psest_0132 0.19 -0.7
131,057 + Psest_0132 0.19 -0.7
131,088 - Psest_0132 0.21 +0.2
131,111 + Psest_0132 0.22 -0.7
131,111 + Psest_0132 0.22 +0.7
131,111 + Psest_0132 0.22 -2.3
131,112 - Psest_0132 0.22 -1.5
131,112 - Psest_0132 0.22 +0.9
131,112 - Psest_0132 0.22 +2.0
131,112 - Psest_0132 0.22 +0.6
131,250 - Psest_0132 0.32 -0.6
131,423 + Psest_0132 0.43 +1.5
131,423 + Psest_0132 0.43 -0.1
131,423 + Psest_0132 0.43 -0.1
131,423 + Psest_0132 0.43 +1.0
131,424 - Psest_0132 0.44 +1.6
131,424 - Psest_0132 0.44 -1.6
131,444 + Psest_0132 0.45 -0.0
131,444 + Psest_0132 0.45 +0.7
131,444 + Psest_0132 0.45 -0.3
131,444 + Psest_0132 0.45 -1.0
131,444 + Psest_0132 0.45 +0.5
131,444 + Psest_0132 0.45 +0.0
131,445 - Psest_0132 0.45 -1.8
131,445 - Psest_0132 0.45 -0.6
131,445 - Psest_0132 0.45 +0.5
131,445 - Psest_0132 0.45 -2.6
131,477 + Psest_0132 0.47 -1.3
131,477 + Psest_0132 0.47 +0.7
131,478 - Psest_0132 0.47 +1.2
131,556 - Psest_0132 0.52 +1.2
131,729 + Psest_0132 0.64 +0.8
131,729 + Psest_0132 0.64 -0.0
131,730 - Psest_0132 0.64 -2.3
131,730 - Psest_0132 0.64 +0.8
131,730 - Psest_0132 0.64 +0.1
131,730 - Psest_0132 0.64 -0.5
131,730 - Psest_0132 0.64 +2.1
131,730 - Psest_0132 0.64 -0.4
131,730 - Psest_0132 0.64 -0.9
131,771 + Psest_0132 0.67 +0.3
131,771 + Psest_0132 0.67 +0.1
131,771 + Psest_0132 0.67 +0.3
131,771 + Psest_0132 0.67 +0.2
131,771 + Psest_0132 0.67 +0.5
131,771 + Psest_0132 0.67 +1.3
131,771 + Psest_0132 0.67 -0.5
131,772 - Psest_0132 0.67 +0.9
131,772 - Psest_0132 0.67 +1.8
131,772 - Psest_0132 0.67 -1.5
131,772 - Psest_0132 0.67 +0.9
131,772 - Psest_0132 0.67 -0.8
131,772 - Psest_0132 0.67 +1.0
131,772 - Psest_0132 0.67 -0.7
131,772 - Psest_0132 0.67 +0.1
131,817 - Psest_0132 0.70 -1.6
131,828 + Psest_0132 0.71 +0.5
131,828 + Psest_0132 0.71 +1.2
131,828 + Psest_0132 0.71 -0.7
131,828 + Psest_0132 0.71 +0.9
131,828 + Psest_0132 0.71 -0.3
131,828 + Psest_0132 0.71 -1.3
131,828 + Psest_0132 0.71 +0.9
131,828 + Psest_0132 0.71 -0.8
131,828 + Psest_0132 0.71 -0.1
131,828 + Psest_0132 0.71 -1.6
131,828 + Psest_0132 0.71 -0.8
131,828 + Psest_0132 0.71 -0.6
131,828 + Psest_0132 0.71 -1.2
131,828 + Psest_0132 0.71 -1.7
131,829 - Psest_0132 0.71 -0.6
131,829 - Psest_0132 0.71 +0.8
131,829 - Psest_0132 0.71 +1.5
131,829 - Psest_0132 0.71 -1.1
131,829 - Psest_0132 0.71 +1.6
131,829 - Psest_0132 0.71 +1.3
131,829 - Psest_0132 0.71 +1.6
131,829 - Psest_0132 0.71 +0.6
131,829 - Psest_0132 0.71 -0.8
131,829 - Psest_0132 0.71 -0.4
131,829 - Psest_0132 0.71 +0.4
131,829 - Psest_0132 0.71 +0.4
131,840 + Psest_0132 0.72 -0.0
131,840 + Psest_0132 0.72 -0.4
131,840 + Psest_0132 0.72 +2.2
131,840 + Psest_0132 0.72 -1.5
131,840 + Psest_0132 0.72 -0.1
131,841 - Psest_0132 0.72 -0.1
131,841 - Psest_0132 0.72 +0.6
132,152 + +0.7
132,152 + -1.5
132,152 + -0.0
132,260 + +0.9
132,260 + -0.3
132,260 + +0.3
132,260 + -0.5
132,260 + +0.4
132,260 + +1.7
132,260 + +0.2
132,260 + +0.6
132,260 + +1.0
132,260 + +0.7
132,260 + -1.4
132,260 + +0.8
132,260 + +1.8
132,260 + +0.1
132,260 + -0.5
132,260 + -0.1
132,260 + -0.3
132,260 + +0.3
132,261 - +0.1
132,261 - +1.4
132,261 - -0.1
132,261 - +0.8
132,261 - +2.3
132,261 - -1.8
132,261 - +0.2
132,261 - +0.2
132,261 - -1.6
132,261 - -1.1
132,261 - +0.1
132,261 - -0.2
132,261 - +0.2
132,261 - +0.5
132,283 + -0.7
132,283 + +0.9
132,361 - Psest_0133 0.15 -1.4
132,361 - Psest_0133 0.15 -0.4
133,016 + Psest_0134 0.13 -0.5
133,016 + Psest_0134 0.13 -0.3
133,016 + Psest_0134 0.13 +0.1
133,016 + Psest_0134 0.13 +0.7
133,017 - Psest_0134 0.13 -0.3
133,017 - Psest_0134 0.13 -1.8

Or see this region's nucleotide sequence