Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0849

Experiment: syringaldehyde 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0847 and Psest_0848 are separated by 231 nucleotidesPsest_0848 and Psest_0849 are separated by 98 nucleotidesPsest_0849 and Psest_0850 overlap by 4 nucleotides Psest_0847: Psest_0847 - drug resistance transporter, EmrB/QacA subfamily, at 916,617 to 918,044 _0847 Psest_0848: Psest_0848 - hypothetical protein, at 918,276 to 918,536 _0848 Psest_0849: Psest_0849 - 6-phosphogluconate dehydratase, at 918,635 to 920,461 _0849 Psest_0850: Psest_0850 - glucokinase, proteobacterial type, at 920,458 to 921,417 _0850 Position (kb) 918 919 920 921Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 918.301 kb on + strandat 918.337 kb on + strand, within Psest_0848at 918.343 kb on + strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.344 kb on - strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.505 kb on + strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.506 kb on - strand, within Psest_0848at 918.702 kb on - strandat 918.855 kb on - strand, within Psest_0849at 919.277 kb on + strand, within Psest_0849at 919.277 kb on + strand, within Psest_0849at 919.304 kb on + strand, within Psest_0849at 919.601 kb on - strand, within Psest_0849at 919.601 kb on - strand, within Psest_0849at 919.748 kb on - strand, within Psest_0849at 919.776 kb on - strand, within Psest_0849at 920.111 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.208 kb on + strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.209 kb on - strand, within Psest_0849at 920.389 kb on + strandat 920.587 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.591 kb on - strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.061 kb on - strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.453 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.456 kb on - strandat 921.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 3 mM
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918,301 + +0.2
918,337 + Psest_0848 0.23 +3.6
918,343 + Psest_0848 0.26 -1.4
918,344 - Psest_0848 0.26 +1.4
918,344 - Psest_0848 0.26 -0.1
918,505 + Psest_0848 0.88 +0.6
918,505 + Psest_0848 0.88 +1.0
918,506 - Psest_0848 0.88 +1.6
918,506 - Psest_0848 0.88 -1.0
918,702 - -1.2
918,855 - Psest_0849 0.12 -1.2
919,277 + Psest_0849 0.35 +0.5
919,277 + Psest_0849 0.35 +0.7
919,304 + Psest_0849 0.37 -1.9
919,601 - Psest_0849 0.53 +1.4
919,601 - Psest_0849 0.53 -0.9
919,748 - Psest_0849 0.61 -0.2
919,776 - Psest_0849 0.62 -0.3
920,111 + Psest_0849 0.81 -2.8
920,208 + Psest_0849 0.86 -0.2
920,208 + Psest_0849 0.86 -0.7
920,208 + Psest_0849 0.86 +0.8
920,208 + Psest_0849 0.86 -1.1
920,208 + Psest_0849 0.86 +0.9
920,208 + Psest_0849 0.86 -2.3
920,208 + Psest_0849 0.86 +0.7
920,208 + Psest_0849 0.86 -1.4
920,208 + Psest_0849 0.86 +0.2
920,208 + Psest_0849 0.86 -0.1
920,208 + Psest_0849 0.86 +0.4
920,208 + Psest_0849 0.86 +0.4
920,208 + Psest_0849 0.86 +0.8
920,209 - Psest_0849 0.86 +1.0
920,209 - Psest_0849 0.86 -1.4
920,209 - Psest_0849 0.86 +1.0
920,209 - Psest_0849 0.86 +0.1
920,209 - Psest_0849 0.86 -0.4
920,209 - Psest_0849 0.86 -0.8
920,209 - Psest_0849 0.86 -0.8
920,209 - Psest_0849 0.86 -1.0
920,209 - Psest_0849 0.86 +0.7
920,209 - Psest_0849 0.86 -0.6
920,209 - Psest_0849 0.86 -0.1
920,209 - Psest_0849 0.86 +2.5
920,209 - Psest_0849 0.86 +0.4
920,209 - Psest_0849 0.86 -1.9
920,209 - Psest_0849 0.86 -1.1
920,209 - Psest_0849 0.86 +0.3
920,389 + +0.6
920,587 + Psest_0850 0.13 -0.6
920,590 + Psest_0850 0.14 +0.0
920,590 + Psest_0850 0.14 -0.1
920,590 + Psest_0850 0.14 -1.7
920,590 + Psest_0850 0.14 -0.3
920,590 + Psest_0850 0.14 +1.2
920,591 - Psest_0850 0.14 -0.1
920,778 + Psest_0850 0.33 +0.5
920,778 + Psest_0850 0.33 -0.0
921,055 + Psest_0850 0.62 -0.9
921,055 + Psest_0850 0.62 -0.3
921,060 + Psest_0850 0.63 -0.6
921,060 + Psest_0850 0.63 -1.5
921,060 + Psest_0850 0.63 +1.4
921,061 - Psest_0850 0.63 -0.7
921,232 + Psest_0850 0.81 +1.5
921,232 + Psest_0850 0.81 +1.4
921,232 + Psest_0850 0.81 -1.9
921,232 + Psest_0850 0.81 +0.0
921,232 + Psest_0850 0.81 -0.4
921,232 + Psest_0850 0.81 +0.4
921,232 + Psest_0850 0.81 -1.8
921,232 + Psest_0850 0.81 -0.3
921,232 + Psest_0850 0.81 -2.3
921,232 + Psest_0850 0.81 +0.2
921,232 + Psest_0850 0.81 +0.6
921,232 + Psest_0850 0.81 -1.2
921,232 + Psest_0850 0.81 +0.7
921,233 - Psest_0850 0.81 +1.5
921,233 - Psest_0850 0.81 -2.1
921,233 - Psest_0850 0.81 +0.4
921,233 - Psest_0850 0.81 -1.4
921,233 - Psest_0850 0.81 +1.5
921,233 - Psest_0850 0.81 -0.5
921,233 - Psest_0850 0.81 -0.4
921,453 + +1.2
921,455 + +0.2
921,455 + +0.5
921,455 + +0.0
921,455 + -0.3
921,455 + +1.0
921,456 - +0.2
921,456 - -1.2

Or see this region's nucleotide sequence