Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0455 and Psest_0456 overlap by 1 nucleotides Psest_0456 and Psest_0457 overlap by 4 nucleotides Psest_0457 and Psest_0458 overlap by 4 nucleotides
Psest_0455: Psest_0455 - ADP-heptose:LPS heptosyltransferase, at 501,190 to 502,146
_0455
Psest_0456: Psest_0456 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 502,146 to 502,880
_0456
Psest_0457: Psest_0457 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 502,877 to 503,623
_0457
Psest_0458: Psest_0458 - Mn2+-dependent serine/threonine protein kinase, at 503,620 to 505,065
_0458
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1 at 501.996 kb on + strand, within Psest_0455 at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.088 kb on + strand at 502.137 kb on + strand at 502.173 kb on + strand at 502.376 kb on + strand, within Psest_0456 at 502.860 kb on + strand at 502.962 kb on + strand, within Psest_0457 at 503.042 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.418 kb on + strand, within Psest_0457 at 503.451 kb on + strand, within Psest_0457
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 501,996 + Psest_0455 0.84 -0.6 502,084 + +1.0 502,084 + +0.6 502,084 + +0.5 502,084 + -0.3 502,084 + +1.3 502,088 + +0.3 502,137 + +1.6 502,173 + -0.8 502,376 + Psest_0456 0.31 -1.3 502,860 + -1.9 502,962 + Psest_0457 0.11 +0.1 503,042 + Psest_0457 0.22 +0.0 503,247 + Psest_0457 0.50 -2.2 503,247 + Psest_0457 0.50 -0.6 503,247 + Psest_0457 0.50 -1.1 503,247 + Psest_0457 0.50 -1.8 503,418 + Psest_0457 0.72 -1.3 503,451 + Psest_0457 0.77 -1.9
Or see this region's nucleotide sequence