Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0454 and Psest_0455 are separated by 8 nucleotides Psest_0455 and Psest_0456 overlap by 1 nucleotides Psest_0456 and Psest_0457 overlap by 4 nucleotides Psest_0457 and Psest_0458 overlap by 4 nucleotides
Psest_0454: Psest_0454 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 500,375 to 501,181
_0454
Psest_0455: Psest_0455 - ADP-heptose:LPS heptosyltransferase, at 501,190 to 502,146
_0455
Psest_0456: Psest_0456 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 502,146 to 502,880
_0456
Psest_0457: Psest_0457 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 502,877 to 503,623
_0457
Psest_0458: Psest_0458 - Mn2+-dependent serine/threonine protein kinase, at 503,620 to 505,065
_0458
Position (kb) 502
503 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 501.236 kb on + strand at 501.236 kb on + strand at 501.236 kb on + strand at 501.236 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.251 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.253 kb on + strand at 501.272 kb on + strand at 501.272 kb on + strand at 501.309 kb on + strand, within Psest_0455 at 501.309 kb on + strand, within Psest_0455 at 501.318 kb on + strand, within Psest_0455 at 501.318 kb on + strand, within Psest_0455 at 501.334 kb on + strand, within Psest_0455 at 501.334 kb on + strand, within Psest_0455 at 501.334 kb on + strand, within Psest_0455 at 501.334 kb on + strand, within Psest_0455 at 501.415 kb on + strand, within Psest_0455 at 501.415 kb on + strand, within Psest_0455 at 501.415 kb on + strand, within Psest_0455 at 501.415 kb on + strand, within Psest_0455 at 501.415 kb on + strand, within Psest_0455 at 501.513 kb on + strand, within Psest_0455 at 501.513 kb on + strand, within Psest_0455 at 501.513 kb on + strand, within Psest_0455 at 501.513 kb on + strand, within Psest_0455 at 501.617 kb on + strand, within Psest_0455 at 501.617 kb on + strand, within Psest_0455 at 501.617 kb on + strand, within Psest_0455 at 501.677 kb on + strand, within Psest_0455 at 501.710 kb on + strand, within Psest_0455 at 501.748 kb on + strand, within Psest_0455 at 501.748 kb on + strand, within Psest_0455 at 501.748 kb on + strand, within Psest_0455 at 501.748 kb on + strand, within Psest_0455 at 501.996 kb on + strand, within Psest_0455 at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.084 kb on + strand at 502.088 kb on + strand at 502.137 kb on + strand at 502.173 kb on + strand at 502.376 kb on + strand, within Psest_0456 at 502.860 kb on + strand at 502.962 kb on + strand, within Psest_0457 at 503.042 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.247 kb on + strand, within Psest_0457 at 503.418 kb on + strand, within Psest_0457 at 503.451 kb on + strand, within Psest_0457
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 501,236 + -0.4 501,236 + -0.1 501,236 + -0.5 501,236 + -2.8 501,251 + -1.8 501,251 + -0.5 501,251 + -1.3 501,251 + -0.8 501,251 + -0.3 501,251 + +0.7 501,251 + -0.6 501,253 + +0.6 501,253 + -1.6 501,253 + +2.3 501,253 + +1.5 501,253 + -0.9 501,253 + +1.8 501,253 + +0.1 501,253 + -1.4 501,253 + +0.0 501,253 + +0.9 501,253 + +0.2 501,253 + +1.4 501,253 + +1.3 501,272 + -0.7 501,272 + -2.3 501,309 + Psest_0455 0.12 -1.8 501,309 + Psest_0455 0.12 -1.1 501,318 + Psest_0455 0.13 +0.2 501,318 + Psest_0455 0.13 +1.8 501,334 + Psest_0455 0.15 +0.7 501,334 + Psest_0455 0.15 -0.4 501,334 + Psest_0455 0.15 +1.3 501,334 + Psest_0455 0.15 +0.3 501,415 + Psest_0455 0.24 +0.1 501,415 + Psest_0455 0.24 +1.9 501,415 + Psest_0455 0.24 -2.0 501,415 + Psest_0455 0.24 -0.6 501,415 + Psest_0455 0.24 -0.9 501,513 + Psest_0455 0.34 -0.2 501,513 + Psest_0455 0.34 -0.5 501,513 + Psest_0455 0.34 +0.5 501,513 + Psest_0455 0.34 +1.5 501,617 + Psest_0455 0.45 +0.2 501,617 + Psest_0455 0.45 -0.3 501,617 + Psest_0455 0.45 -0.1 501,677 + Psest_0455 0.51 -0.8 501,710 + Psest_0455 0.54 -0.9 501,748 + Psest_0455 0.58 -0.7 501,748 + Psest_0455 0.58 -0.6 501,748 + Psest_0455 0.58 +2.6 501,748 + Psest_0455 0.58 -0.1 501,996 + Psest_0455 0.84 -0.6 502,084 + +1.0 502,084 + +0.6 502,084 + +0.5 502,084 + -0.3 502,084 + +1.3 502,088 + +0.3 502,137 + +1.6 502,173 + -0.8 502,376 + Psest_0456 0.31 -1.3 502,860 + -1.9 502,962 + Psest_0457 0.11 +0.1 503,042 + Psest_0457 0.22 +0.0 503,247 + Psest_0457 0.50 -2.2 503,247 + Psest_0457 0.50 -0.6 503,247 + Psest_0457 0.50 -1.1 503,247 + Psest_0457 0.50 -1.8 503,418 + Psest_0457 0.72 -1.3 503,451 + Psest_0457 0.77 -1.9
Or see this region's nucleotide sequence