Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2265 and Psest_2266 are separated by 91 nucleotides Psest_2266 and Psest_2267 are separated by 50 nucleotides Psest_2267 and Psest_2268 overlap by 17 nucleotides
Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960
_2265
Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396
_2266
Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144
_2267
Psest_2268: Psest_2268 - Alcohol dehydrogenase, class IV, at 2,417,128 to 2,418,291
_2268
Position (kb)
2415
2416
2417
2418 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2414.614 kb on - strand, within Psest_2265 at 2414.614 kb on - strand, within Psest_2265 at 2414.936 kb on - strand at 2414.943 kb on + strand at 2414.943 kb on + strand at 2415.158 kb on - strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.228 kb on + strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.229 kb on - strand, within Psest_2266 at 2415.387 kb on - strand at 2415.679 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267 at 2415.912 kb on + strand, within Psest_2267 at 2416.175 kb on + strand, within Psest_2267 at 2416.339 kb on + strand, within Psest_2267 at 2416.339 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.549 kb on + strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.550 kb on - strand, within Psest_2267 at 2416.611 kb on - strand, within Psest_2267 at 2416.611 kb on - strand, within Psest_2267 at 2416.684 kb on - strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.750 kb on + strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.751 kb on - strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.820 kb on + strand, within Psest_2267 at 2416.821 kb on - strand, within Psest_2267 at 2416.821 kb on - strand, within Psest_2267 at 2417.100 kb on + strand at 2417.100 kb on + strand at 2417.402 kb on + strand, within Psest_2268 at 2417.402 kb on + strand, within Psest_2268 at 2417.402 kb on + strand, within Psest_2268 at 2417.403 kb on - strand, within Psest_2268 at 2417.764 kb on + strand, within Psest_2268 at 2417.764 kb on + strand, within Psest_2268 at 2417.928 kb on - strand, within Psest_2268
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 2,414,614 - Psest_2265 0.72 -0.5 2,414,614 - Psest_2265 0.72 +2.4 2,414,936 - -2.4 2,414,943 + +0.0 2,414,943 + -0.8 2,415,158 - Psest_2266 0.31 +0.1 2,415,228 + Psest_2266 0.51 -1.5 2,415,228 + Psest_2266 0.51 +0.8 2,415,228 + Psest_2266 0.51 +0.6 2,415,229 - Psest_2266 0.51 -2.3 2,415,229 - Psest_2266 0.51 -0.1 2,415,229 - Psest_2266 0.51 -1.2 2,415,387 - -0.7 2,415,679 + Psest_2267 0.14 -1.2 2,415,912 + Psest_2267 0.27 +1.1 2,415,912 + Psest_2267 0.27 -1.5 2,415,912 + Psest_2267 0.27 +1.3 2,416,175 + Psest_2267 0.43 -0.1 2,416,339 + Psest_2267 0.53 +0.3 2,416,339 + Psest_2267 0.53 +0.4 2,416,549 + Psest_2267 0.65 +0.5 2,416,549 + Psest_2267 0.65 -0.3 2,416,549 + Psest_2267 0.65 -1.0 2,416,550 - Psest_2267 0.65 +0.8 2,416,550 - Psest_2267 0.65 +0.4 2,416,550 - Psest_2267 0.65 +0.9 2,416,550 - Psest_2267 0.65 +1.3 2,416,550 - Psest_2267 0.65 +1.7 2,416,611 - Psest_2267 0.69 +0.7 2,416,611 - Psest_2267 0.69 +2.3 2,416,684 - Psest_2267 0.73 -0.2 2,416,750 + Psest_2267 0.77 +1.8 2,416,750 + Psest_2267 0.77 -0.5 2,416,750 + Psest_2267 0.77 -0.4 2,416,750 + Psest_2267 0.77 -0.3 2,416,750 + Psest_2267 0.77 -0.1 2,416,750 + Psest_2267 0.77 +0.1 2,416,750 + Psest_2267 0.77 +2.1 2,416,751 - Psest_2267 0.77 -0.7 2,416,751 - Psest_2267 0.77 +0.9 2,416,751 - Psest_2267 0.77 +0.7 2,416,751 - Psest_2267 0.77 +1.1 2,416,820 + Psest_2267 0.81 -0.0 2,416,820 + Psest_2267 0.81 +1.3 2,416,820 + Psest_2267 0.81 -0.6 2,416,820 + Psest_2267 0.81 +0.1 2,416,821 - Psest_2267 0.81 +0.3 2,416,821 - Psest_2267 0.81 +1.3 2,417,100 + +1.2 2,417,100 + +0.5 2,417,402 + Psest_2268 0.24 +0.6 2,417,402 + Psest_2268 0.24 -1.0 2,417,402 + Psest_2268 0.24 -0.2 2,417,403 - Psest_2268 0.24 +1.1 2,417,764 + Psest_2268 0.55 -1.9 2,417,764 + Psest_2268 0.55 +1.0 2,417,928 - Psest_2268 0.69 +1.2
Or see this region's nucleotide sequence