Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2267

Experiment: syringaldehyde 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2265 and Psest_2266 are separated by 91 nucleotidesPsest_2266 and Psest_2267 are separated by 50 nucleotidesPsest_2267 and Psest_2268 overlap by 17 nucleotides Psest_2265: Psest_2265 - Outer membrane protein, at 2,413,707 to 2,414,960 _2265 Psest_2266: Psest_2266 - hypothetical protein, at 2,415,052 to 2,415,396 _2266 Psest_2267: Psest_2267 - PAS domain S-box, at 2,415,447 to 2,417,144 _2267 Psest_2268: Psest_2268 - Alcohol dehydrogenase, class IV, at 2,417,128 to 2,418,291 _2268 Position (kb) 2415 2416 2417 2418Strain fitness (log2 ratio) -2 -1 0 1 2at 2414.614 kb on - strand, within Psest_2265at 2414.614 kb on - strand, within Psest_2265at 2414.936 kb on - strandat 2414.943 kb on + strandat 2414.943 kb on + strandat 2415.158 kb on - strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.228 kb on + strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.229 kb on - strand, within Psest_2266at 2415.387 kb on - strandat 2415.679 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2415.912 kb on + strand, within Psest_2267at 2416.175 kb on + strand, within Psest_2267at 2416.339 kb on + strand, within Psest_2267at 2416.339 kb on + strand, within Psest_2267at 2416.549 kb on + strand, within Psest_2267at 2416.549 kb on + strand, within Psest_2267at 2416.549 kb on + strand, within Psest_2267at 2416.550 kb on - strand, within Psest_2267at 2416.550 kb on - strand, within Psest_2267at 2416.550 kb on - strand, within Psest_2267at 2416.550 kb on - strand, within Psest_2267at 2416.550 kb on - strand, within Psest_2267at 2416.611 kb on - strand, within Psest_2267at 2416.611 kb on - strand, within Psest_2267at 2416.684 kb on - strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.750 kb on + strand, within Psest_2267at 2416.751 kb on - strand, within Psest_2267at 2416.751 kb on - strand, within Psest_2267at 2416.751 kb on - strand, within Psest_2267at 2416.751 kb on - strand, within Psest_2267at 2416.820 kb on + strand, within Psest_2267at 2416.820 kb on + strand, within Psest_2267at 2416.820 kb on + strand, within Psest_2267at 2416.820 kb on + strand, within Psest_2267at 2416.821 kb on - strand, within Psest_2267at 2416.821 kb on - strand, within Psest_2267at 2417.100 kb on + strandat 2417.100 kb on + strandat 2417.402 kb on + strand, within Psest_2268at 2417.402 kb on + strand, within Psest_2268at 2417.402 kb on + strand, within Psest_2268at 2417.403 kb on - strand, within Psest_2268at 2417.764 kb on + strand, within Psest_2268at 2417.764 kb on + strand, within Psest_2268at 2417.928 kb on - strand, within Psest_2268

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Per-strain Table

Position Strand Gene LocusTag Fraction syringaldehyde 3 mM
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2,414,614 - Psest_2265 0.72 -0.5
2,414,614 - Psest_2265 0.72 +2.4
2,414,936 - -2.4
2,414,943 + +0.0
2,414,943 + -0.8
2,415,158 - Psest_2266 0.31 +0.1
2,415,228 + Psest_2266 0.51 -1.5
2,415,228 + Psest_2266 0.51 +0.8
2,415,228 + Psest_2266 0.51 +0.6
2,415,229 - Psest_2266 0.51 -2.3
2,415,229 - Psest_2266 0.51 -0.1
2,415,229 - Psest_2266 0.51 -1.2
2,415,387 - -0.7
2,415,679 + Psest_2267 0.14 -1.2
2,415,912 + Psest_2267 0.27 +1.1
2,415,912 + Psest_2267 0.27 -1.5
2,415,912 + Psest_2267 0.27 +1.3
2,416,175 + Psest_2267 0.43 -0.1
2,416,339 + Psest_2267 0.53 +0.3
2,416,339 + Psest_2267 0.53 +0.4
2,416,549 + Psest_2267 0.65 +0.5
2,416,549 + Psest_2267 0.65 -0.3
2,416,549 + Psest_2267 0.65 -1.0
2,416,550 - Psest_2267 0.65 +0.8
2,416,550 - Psest_2267 0.65 +0.4
2,416,550 - Psest_2267 0.65 +0.9
2,416,550 - Psest_2267 0.65 +1.3
2,416,550 - Psest_2267 0.65 +1.7
2,416,611 - Psest_2267 0.69 +0.7
2,416,611 - Psest_2267 0.69 +2.3
2,416,684 - Psest_2267 0.73 -0.2
2,416,750 + Psest_2267 0.77 +1.8
2,416,750 + Psest_2267 0.77 -0.5
2,416,750 + Psest_2267 0.77 -0.4
2,416,750 + Psest_2267 0.77 -0.3
2,416,750 + Psest_2267 0.77 -0.1
2,416,750 + Psest_2267 0.77 +0.1
2,416,750 + Psest_2267 0.77 +2.1
2,416,751 - Psest_2267 0.77 -0.7
2,416,751 - Psest_2267 0.77 +0.9
2,416,751 - Psest_2267 0.77 +0.7
2,416,751 - Psest_2267 0.77 +1.1
2,416,820 + Psest_2267 0.81 -0.0
2,416,820 + Psest_2267 0.81 +1.3
2,416,820 + Psest_2267 0.81 -0.6
2,416,820 + Psest_2267 0.81 +0.1
2,416,821 - Psest_2267 0.81 +0.3
2,416,821 - Psest_2267 0.81 +1.3
2,417,100 + +1.2
2,417,100 + +0.5
2,417,402 + Psest_2268 0.24 +0.6
2,417,402 + Psest_2268 0.24 -1.0
2,417,402 + Psest_2268 0.24 -0.2
2,417,403 - Psest_2268 0.24 +1.1
2,417,764 + Psest_2268 0.55 -1.9
2,417,764 + Psest_2268 0.55 +1.0
2,417,928 - Psest_2268 0.69 +1.2

Or see this region's nucleotide sequence