Experiment: syringaldehyde 3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1229 and Psest_1230 are separated by 6 nucleotides Psest_1230 and Psest_1231 are separated by 64 nucleotides
Psest_1229: Psest_1229 - Di- and tricarboxylate transporters, at 1,335,686 to 1,337,512
_1229
Psest_1230: Psest_1230 - Uncharacterized protein conserved in bacteria, at 1,337,519 to 1,337,815
_1230
Psest_1231: Psest_1231 - Na+/H+ antiporter NhaD and related arsenite permeases, at 1,337,880 to 1,339,262
_1231
Position (kb)
1337
1338 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1336.570 kb on - strand, within Psest_1229 at 1336.573 kb on - strand, within Psest_1229 at 1336.756 kb on - strand, within Psest_1229 at 1336.767 kb on - strand, within Psest_1229 at 1336.873 kb on + strand, within Psest_1229 at 1336.938 kb on + strand, within Psest_1229 at 1336.938 kb on + strand, within Psest_1229 at 1336.938 kb on + strand, within Psest_1229 at 1336.939 kb on - strand, within Psest_1229 at 1336.939 kb on - strand, within Psest_1229 at 1337.120 kb on + strand, within Psest_1229 at 1337.151 kb on - strand, within Psest_1229 at 1337.151 kb on - strand, within Psest_1229 at 1337.604 kb on + strand, within Psest_1230 at 1337.772 kb on + strand, within Psest_1230 at 1337.772 kb on + strand, within Psest_1230 at 1337.772 kb on + strand, within Psest_1230 at 1337.785 kb on - strand, within Psest_1230 at 1337.905 kb on + strand at 1337.905 kb on + strand at 1337.905 kb on + strand at 1337.905 kb on + strand at 1337.906 kb on - strand at 1337.906 kb on - strand at 1337.906 kb on - strand at 1337.906 kb on - strand at 1337.926 kb on + strand at 1337.962 kb on + strand at 1337.963 kb on - strand at 1338.052 kb on - strand, within Psest_1231 at 1338.154 kb on + strand, within Psest_1231 at 1338.154 kb on + strand, within Psest_1231 at 1338.155 kb on - strand, within Psest_1231 at 1338.221 kb on - strand, within Psest_1231 at 1338.221 kb on - strand, within Psest_1231 at 1338.221 kb on - strand, within Psest_1231 at 1338.221 kb on - strand, within Psest_1231 at 1338.233 kb on - strand, within Psest_1231 at 1338.366 kb on + strand, within Psest_1231 at 1338.463 kb on + strand, within Psest_1231 at 1338.463 kb on + strand, within Psest_1231 at 1338.464 kb on - strand, within Psest_1231 at 1338.464 kb on - strand, within Psest_1231 at 1338.464 kb on - strand, within Psest_1231 at 1338.649 kb on - strand, within Psest_1231 at 1338.649 kb on - strand, within Psest_1231
Per-strain Table
Position Strand Gene LocusTag Fraction syringaldehyde 3 mM remove 1,336,570 - Psest_1229 0.48 +2.2 1,336,573 - Psest_1229 0.49 -1.2 1,336,756 - Psest_1229 0.59 -1.5 1,336,767 - Psest_1229 0.59 -0.9 1,336,873 + Psest_1229 0.65 +0.9 1,336,938 + Psest_1229 0.69 +0.0 1,336,938 + Psest_1229 0.69 -1.3 1,336,938 + Psest_1229 0.69 +0.6 1,336,939 - Psest_1229 0.69 -0.4 1,336,939 - Psest_1229 0.69 -0.4 1,337,120 + Psest_1229 0.78 -0.2 1,337,151 - Psest_1229 0.80 -0.1 1,337,151 - Psest_1229 0.80 +0.1 1,337,604 + Psest_1230 0.29 -0.4 1,337,772 + Psest_1230 0.85 +0.3 1,337,772 + Psest_1230 0.85 -2.6 1,337,772 + Psest_1230 0.85 -1.2 1,337,785 - Psest_1230 0.90 -1.5 1,337,905 + +0.4 1,337,905 + -0.5 1,337,905 + +0.9 1,337,905 + -2.1 1,337,906 - -1.1 1,337,906 - +2.4 1,337,906 - +0.2 1,337,906 - +0.4 1,337,926 + -1.2 1,337,962 + -1.7 1,337,963 - -2.2 1,338,052 - Psest_1231 0.12 +1.5 1,338,154 + Psest_1231 0.20 +2.4 1,338,154 + Psest_1231 0.20 -0.8 1,338,155 - Psest_1231 0.20 -1.0 1,338,221 - Psest_1231 0.25 +0.1 1,338,221 - Psest_1231 0.25 -2.0 1,338,221 - Psest_1231 0.25 -1.2 1,338,221 - Psest_1231 0.25 +0.7 1,338,233 - Psest_1231 0.26 +0.9 1,338,366 + Psest_1231 0.35 +0.6 1,338,463 + Psest_1231 0.42 -1.6 1,338,463 + Psest_1231 0.42 +1.0 1,338,464 - Psest_1231 0.42 +1.3 1,338,464 - Psest_1231 0.42 -0.9 1,338,464 - Psest_1231 0.42 -0.1 1,338,649 - Psest_1231 0.56 -0.1 1,338,649 - Psest_1231 0.56 -0.3
Or see this region's nucleotide sequence