Experiment: RCH2_defined_1percent_glucose with Betaine 100 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27400 and BWI76_RS27405 are separated by 275 nucleotides BWI76_RS27405 and BWI76_RS27410 are separated by 5 nucleotides
BWI76_RS27400: BWI76_RS27400 - chloride channel protein, at 5,684,883 to 5,686,142
_RS27400
BWI76_RS27405: BWI76_RS27405 - membrane protein, at 5,686,418 to 5,687,035
_RS27405
BWI76_RS27410: BWI76_RS27410 - DNA ligase B, at 5,687,041 to 5,688,717
_RS27410
Position (kb) 5686
5687
5688 Strain fitness (log2 ratio) -1
0
1 at 5685.446 kb on + strand, within BWI76_RS27400 at 5685.587 kb on - strand, within BWI76_RS27400 at 5685.619 kb on + strand, within BWI76_RS27400 at 5685.683 kb on + strand, within BWI76_RS27400 at 5685.773 kb on - strand, within BWI76_RS27400 at 5685.784 kb on - strand, within BWI76_RS27400 at 5685.797 kb on - strand, within BWI76_RS27400 at 5685.843 kb on - strand, within BWI76_RS27400 at 5685.890 kb on + strand, within BWI76_RS27400 at 5685.954 kb on - strand, within BWI76_RS27400 at 5685.967 kb on - strand, within BWI76_RS27400 at 5685.998 kb on + strand, within BWI76_RS27400 at 5686.006 kb on - strand, within BWI76_RS27400 at 5686.152 kb on + strand at 5686.224 kb on + strand at 5686.224 kb on + strand at 5686.231 kb on - strand at 5686.231 kb on - strand at 5686.232 kb on - strand at 5686.421 kb on - strand at 5686.421 kb on - strand at 5686.460 kb on + strand at 5686.545 kb on - strand, within BWI76_RS27405 at 5686.590 kb on + strand, within BWI76_RS27405 at 5686.592 kb on + strand, within BWI76_RS27405 at 5686.598 kb on - strand, within BWI76_RS27405 at 5686.634 kb on + strand, within BWI76_RS27405 at 5686.784 kb on + strand, within BWI76_RS27405 at 5686.816 kb on - strand, within BWI76_RS27405 at 5686.846 kb on - strand, within BWI76_RS27405 at 5686.864 kb on - strand, within BWI76_RS27405 at 5686.899 kb on - strand, within BWI76_RS27405 at 5686.899 kb on - strand at 5686.986 kb on + strand at 5687.283 kb on + strand, within BWI76_RS27410 at 5687.316 kb on + strand, within BWI76_RS27410 at 5687.413 kb on - strand, within BWI76_RS27410 at 5687.515 kb on + strand, within BWI76_RS27410 at 5687.515 kb on + strand, within BWI76_RS27410 at 5687.557 kb on + strand, within BWI76_RS27410 at 5687.557 kb on + strand, within BWI76_RS27410 at 5687.580 kb on - strand, within BWI76_RS27410 at 5687.757 kb on + strand, within BWI76_RS27410 at 5687.786 kb on - strand, within BWI76_RS27410 at 5687.941 kb on - strand, within BWI76_RS27410 at 5688.026 kb on - strand, within BWI76_RS27410
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Betaine 100 uM remove 5,685,446 + BWI76_RS27400 0.45 -0.1 5,685,587 - BWI76_RS27400 0.56 +0.0 5,685,619 + BWI76_RS27400 0.58 +0.3 5,685,683 + BWI76_RS27400 0.63 +0.3 5,685,773 - BWI76_RS27400 0.71 +0.1 5,685,784 - BWI76_RS27400 0.72 +0.0 5,685,797 - BWI76_RS27400 0.73 +1.4 5,685,843 - BWI76_RS27400 0.76 -0.9 5,685,890 + BWI76_RS27400 0.80 -0.0 5,685,954 - BWI76_RS27400 0.85 +0.1 5,685,967 - BWI76_RS27400 0.86 +0.5 5,685,998 + BWI76_RS27400 0.88 +0.4 5,686,006 - BWI76_RS27400 0.89 +0.6 5,686,152 + +0.4 5,686,224 + +0.2 5,686,224 + -0.1 5,686,231 - +0.2 5,686,231 - +0.1 5,686,232 - -1.4 5,686,421 - +0.0 5,686,421 - -0.0 5,686,460 + +1.4 5,686,545 - BWI76_RS27405 0.21 +0.3 5,686,590 + BWI76_RS27405 0.28 +0.3 5,686,592 + BWI76_RS27405 0.28 +1.2 5,686,598 - BWI76_RS27405 0.29 +0.1 5,686,634 + BWI76_RS27405 0.35 +1.6 5,686,784 + BWI76_RS27405 0.59 +1.3 5,686,816 - BWI76_RS27405 0.64 +0.7 5,686,846 - BWI76_RS27405 0.69 -0.0 5,686,864 - BWI76_RS27405 0.72 +0.1 5,686,899 - BWI76_RS27405 0.78 +1.2 5,686,899 - +1.6 5,686,986 + -0.7 5,687,283 + BWI76_RS27410 0.14 -0.4 5,687,316 + BWI76_RS27410 0.16 -0.2 5,687,413 - BWI76_RS27410 0.22 -0.2 5,687,515 + BWI76_RS27410 0.28 +0.1 5,687,515 + BWI76_RS27410 0.28 +0.4 5,687,557 + BWI76_RS27410 0.31 +0.5 5,687,557 + BWI76_RS27410 0.31 -0.2 5,687,580 - BWI76_RS27410 0.32 -0.0 5,687,757 + BWI76_RS27410 0.43 -0.7 5,687,786 - BWI76_RS27410 0.44 -0.1 5,687,941 - BWI76_RS27410 0.54 -0.2 5,688,026 - BWI76_RS27410 0.59 +0.5
Or see this region's nucleotide sequence