Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23980

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23975 and BWI76_RS23980 are separated by 97 nucleotidesBWI76_RS23980 and BWI76_RS23985 are separated by 51 nucleotides BWI76_RS23975: BWI76_RS23975 - class II fructose-bisphosphate aldolase, at 5,004,071 to 5,005,150 _RS23975 BWI76_RS23980: BWI76_RS23980 - phosphoglycerate kinase, at 5,005,248 to 5,006,411 _RS23980 BWI76_RS23985: BWI76_RS23985 - erythrose-4-phosphate dehydrogenase, at 5,006,463 to 5,007,482 _RS23985 Position (kb) 5005 5006 5007Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5006.473 kb on - strandat 5006.518 kb on - strandat 5006.654 kb on + strand, within BWI76_RS23985at 5006.738 kb on + strand, within BWI76_RS23985at 5006.829 kb on - strand, within BWI76_RS23985at 5006.963 kb on - strand, within BWI76_RS23985at 5006.968 kb on - strand, within BWI76_RS23985at 5007.007 kb on - strand, within BWI76_RS23985at 5007.222 kb on + strand, within BWI76_RS23985at 5007.241 kb on + strand, within BWI76_RS23985at 5007.371 kb on + strand, within BWI76_RS23985

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM
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5,006,473 - +1.0
5,006,518 - +1.5
5,006,654 + BWI76_RS23985 0.19 -1.6
5,006,738 + BWI76_RS23985 0.27 -0.1
5,006,829 - BWI76_RS23985 0.36 -3.2
5,006,963 - BWI76_RS23985 0.49 -2.4
5,006,968 - BWI76_RS23985 0.50 -1.9
5,007,007 - BWI76_RS23985 0.53 +0.1
5,007,222 + BWI76_RS23985 0.74 +3.1
5,007,241 + BWI76_RS23985 0.76 +1.3
5,007,371 + BWI76_RS23985 0.89 +0.9

Or see this region's nucleotide sequence