Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18410 and BWI76_RS18415 overlap by 26 nucleotides BWI76_RS18415 and BWI76_RS18420 overlap by 20 nucleotides BWI76_RS18420 and BWI76_RS18425 are separated by 17 nucleotides BWI76_RS18425 and BWI76_RS18430 are separated by 42 nucleotides
BWI76_RS18410: BWI76_RS18410 - drug/metabolite exporter YedA, at 3,820,405 to 3,821,316
_RS18410
BWI76_RS18415: BWI76_RS18415 - very short patch repair endonuclease, at 3,821,291 to 3,821,785
_RS18415
BWI76_RS18420: BWI76_RS18420 - DNA (cytosine-5-)-methyltransferase, at 3,821,766 to 3,823,238
_RS18420
BWI76_RS18425: BWI76_RS18425 - phosphohydrolase, at 3,823,256 to 3,823,951
_RS18425
BWI76_RS18430: BWI76_RS18430 - hypothetical protein, at 3,823,994 to 3,824,275
_RS18430
Position (kb)
3821
3822
3823
3824 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3820.848 kb on + strand, within BWI76_RS18410 at 3821.203 kb on + strand, within BWI76_RS18410 at 3821.326 kb on + strand at 3821.438 kb on + strand, within BWI76_RS18415 at 3821.517 kb on + strand, within BWI76_RS18415 at 3821.895 kb on + strand at 3822.162 kb on + strand, within BWI76_RS18420 at 3822.213 kb on - strand, within BWI76_RS18420 at 3822.238 kb on + strand, within BWI76_RS18420 at 3822.273 kb on + strand, within BWI76_RS18420 at 3822.299 kb on + strand, within BWI76_RS18420 at 3822.317 kb on + strand, within BWI76_RS18420 at 3822.344 kb on + strand, within BWI76_RS18420 at 3822.431 kb on + strand, within BWI76_RS18420 at 3822.439 kb on - strand, within BWI76_RS18420 at 3822.713 kb on - strand, within BWI76_RS18420 at 3822.788 kb on - strand, within BWI76_RS18420 at 3823.001 kb on + strand, within BWI76_RS18420 at 3823.266 kb on + strand at 3823.267 kb on + strand at 3823.274 kb on - strand at 3823.323 kb on + strand at 3823.335 kb on + strand, within BWI76_RS18425 at 3823.343 kb on - strand, within BWI76_RS18425 at 3823.835 kb on + strand, within BWI76_RS18425 at 3823.972 kb on - strand at 3823.979 kb on - strand at 3823.994 kb on - strand at 3824.162 kb on - strand, within BWI76_RS18430 at 3824.173 kb on + strand, within BWI76_RS18430 at 3824.181 kb on - strand, within BWI76_RS18430 at 3824.196 kb on - strand, within BWI76_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM remove 3,820,848 + BWI76_RS18410 0.49 +0.9 3,820,848 + BWI76_RS18410 0.49 -0.6 3,820,848 + BWI76_RS18410 0.49 +1.5 3,820,848 + BWI76_RS18410 0.49 -0.7 3,821,203 + BWI76_RS18410 0.88 -1.4 3,821,326 + +0.6 3,821,438 + BWI76_RS18415 0.30 +0.1 3,821,517 + BWI76_RS18415 0.46 +0.3 3,821,895 + +1.3 3,822,162 + BWI76_RS18420 0.27 +2.5 3,822,213 - BWI76_RS18420 0.30 +2.7 3,822,238 + BWI76_RS18420 0.32 +0.4 3,822,273 + BWI76_RS18420 0.34 +2.5 3,822,299 + BWI76_RS18420 0.36 +0.7 3,822,317 + BWI76_RS18420 0.37 +2.1 3,822,344 + BWI76_RS18420 0.39 +1.6 3,822,431 + BWI76_RS18420 0.45 +1.6 3,822,439 - BWI76_RS18420 0.46 +2.8 3,822,713 - BWI76_RS18420 0.64 +2.2 3,822,788 - BWI76_RS18420 0.69 +1.9 3,823,001 + BWI76_RS18420 0.84 +2.0 3,823,266 + +0.2 3,823,267 + +0.4 3,823,274 - -0.2 3,823,323 + -1.5 3,823,335 + BWI76_RS18425 0.11 -0.1 3,823,343 - BWI76_RS18425 0.12 +0.6 3,823,835 + BWI76_RS18425 0.83 -0.8 3,823,972 - -0.5 3,823,979 - +0.1 3,823,994 - +1.3 3,824,162 - BWI76_RS18430 0.60 +0.6 3,824,173 + BWI76_RS18430 0.63 +0.8 3,824,181 - BWI76_RS18430 0.66 -1.0 3,824,196 - BWI76_RS18430 0.72 +1.0
Or see this region's nucleotide sequence