Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06585

Experiment: RCH2_defined_1percent_glucose with Chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06575 and BWI76_RS06580 are separated by 115 nucleotidesBWI76_RS06580 and BWI76_RS06585 are separated by 42 nucleotidesBWI76_RS06585 and BWI76_RS06590 overlap by 8 nucleotides BWI76_RS06575: BWI76_RS06575 - cysteine synthase, at 1,382,307 to 1,383,359 _RS06575 BWI76_RS06580: BWI76_RS06580 - transcriptional regulator, at 1,383,475 to 1,383,933 _RS06580 BWI76_RS06585: BWI76_RS06585 - multidrug ABC transporter permease/ATP-binding protein, at 1,383,976 to 1,385,748 _RS06585 BWI76_RS06590: BWI76_RS06590 - multidrug ABC transporter permease/ATP-binding protein, at 1,385,741 to 1,387,519 _RS06590 Position (kb) 1383 1384 1385 1386Strain fitness (log2 ratio) -3 -2 -1 0 1at 1383.246 kb on + strand, within BWI76_RS06575at 1383.398 kb on - strandat 1383.562 kb on - strand, within BWI76_RS06580at 1383.567 kb on - strand, within BWI76_RS06580at 1383.689 kb on - strand, within BWI76_RS06580at 1383.964 kb on + strandat 1384.045 kb on - strandat 1384.241 kb on + strand, within BWI76_RS06585at 1384.397 kb on + strand, within BWI76_RS06585at 1384.402 kb on + strand, within BWI76_RS06585at 1384.410 kb on - strand, within BWI76_RS06585at 1384.410 kb on - strand, within BWI76_RS06585at 1384.736 kb on + strand, within BWI76_RS06585at 1384.774 kb on - strand, within BWI76_RS06585at 1384.871 kb on + strand, within BWI76_RS06585at 1385.137 kb on - strand, within BWI76_RS06585at 1385.402 kb on + strand, within BWI76_RS06585at 1385.526 kb on + strand, within BWI76_RS06585at 1385.620 kb on + strandat 1385.860 kb on - strandat 1385.945 kb on - strandat 1385.947 kb on + strand, within BWI76_RS06590at 1385.983 kb on + strand, within BWI76_RS06590at 1386.152 kb on - strand, within BWI76_RS06590at 1386.370 kb on + strand, within BWI76_RS06590at 1386.572 kb on - strand, within BWI76_RS06590

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 600 mM
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1,383,246 + BWI76_RS06575 0.89 +0.6
1,383,398 - -0.3
1,383,562 - BWI76_RS06580 0.19 -2.5
1,383,567 - BWI76_RS06580 0.20 -1.4
1,383,689 - BWI76_RS06580 0.47 +0.7
1,383,964 + +0.1
1,384,045 - -1.8
1,384,241 + BWI76_RS06585 0.15 -0.7
1,384,397 + BWI76_RS06585 0.24 -1.5
1,384,402 + BWI76_RS06585 0.24 -2.0
1,384,410 - BWI76_RS06585 0.24 -0.4
1,384,410 - BWI76_RS06585 0.24 -1.6
1,384,736 + BWI76_RS06585 0.43 -0.3
1,384,774 - BWI76_RS06585 0.45 -1.5
1,384,871 + BWI76_RS06585 0.50 -0.5
1,385,137 - BWI76_RS06585 0.65 -1.3
1,385,402 + BWI76_RS06585 0.80 -2.1
1,385,526 + BWI76_RS06585 0.87 -2.2
1,385,620 + -1.8
1,385,860 - -1.6
1,385,945 - -0.9
1,385,947 + BWI76_RS06590 0.12 -1.7
1,385,983 + BWI76_RS06590 0.14 -1.4
1,386,152 - BWI76_RS06590 0.23 -3.1
1,386,370 + BWI76_RS06590 0.35 -3.7
1,386,572 - BWI76_RS06590 0.47 +1.0

Or see this region's nucleotide sequence