Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3946 and Psest_3947 overlap by 4 nucleotides Psest_3947 and Psest_3948 overlap by 4 nucleotides Psest_3948 and Psest_3949 are separated by 173 nucleotides Psest_3949 and Psest_3950 are separated by 8 nucleotides
Psest_3946: Psest_3946 - twin arginine-targeting protein translocase TatB, at 4,115,949 to 4,116,377
_3946
Psest_3947: Psest_3947 - Twin arginine targeting (Tat) protein translocase TatC, at 4,116,374 to 4,117,177
_3947
Psest_3948: Psest_3948 - RNA methyltransferase, RsmE family, at 4,117,174 to 4,117,881
_3948
Psest_3949: Psest_3949 - Uncharacterised protein family (UPF0158)., at 4,118,055 to 4,118,480
_3949
Psest_3950: Psest_3950 - D-tyrosyl-tRNA(Tyr) deacylase, at 4,118,489 to 4,118,926
_3950
Position (kb) 4117
4118 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4117.945 kb on - strand at 4117.945 kb on - strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.022 kb on + strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.023 kb on - strand at 4118.029 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.071 kb on + strand at 4118.072 kb on - strand at 4118.072 kb on - strand at 4118.091 kb on + strand at 4118.091 kb on + strand at 4118.092 kb on - strand at 4118.092 kb on - strand at 4118.122 kb on - strand, within Psest_3949 at 4118.122 kb on - strand, within Psest_3949 at 4118.124 kb on + strand, within Psest_3949 at 4118.124 kb on + strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.125 kb on - strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.134 kb on + strand, within Psest_3949 at 4118.135 kb on - strand, within Psest_3949 at 4118.135 kb on - strand, within Psest_3949 at 4118.196 kb on + strand, within Psest_3949 at 4118.197 kb on - strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.203 kb on + strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.204 kb on - strand, within Psest_3949 at 4118.308 kb on + strand, within Psest_3949 at 4118.309 kb on - strand, within Psest_3949 at 4118.400 kb on + strand, within Psest_3949 at 4118.604 kb on + strand, within Psest_3950 at 4118.604 kb on + strand, within Psest_3950 at 4118.605 kb on - strand, within Psest_3950 at 4118.605 kb on - strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.610 kb on + strand, within Psest_3950 at 4118.611 kb on - strand, within Psest_3950 at 4118.613 kb on - strand, within Psest_3950 at 4118.613 kb on - strand, within Psest_3950 at 4118.772 kb on + strand, within Psest_3950
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 4,117,945 - +0.1 4,117,945 - +1.3 4,118,022 + -0.9 4,118,022 + +1.4 4,118,022 + -1.0 4,118,022 + +1.1 4,118,022 + -0.7 4,118,022 + +0.4 4,118,023 - -1.9 4,118,023 - +0.9 4,118,023 - +0.0 4,118,023 - -0.3 4,118,029 + -0.5 4,118,071 + -0.8 4,118,071 + +0.1 4,118,071 + +0.8 4,118,071 + -1.9 4,118,071 + +2.3 4,118,071 + -0.4 4,118,071 + -1.4 4,118,072 - +0.6 4,118,072 - -0.2 4,118,091 + +0.8 4,118,091 + +1.9 4,118,092 - -2.4 4,118,092 - -1.6 4,118,122 - Psest_3949 0.16 -0.9 4,118,122 - Psest_3949 0.16 +1.8 4,118,124 + Psest_3949 0.16 -0.4 4,118,124 + Psest_3949 0.16 -1.0 4,118,125 - Psest_3949 0.16 +0.5 4,118,125 - Psest_3949 0.16 +0.1 4,118,125 - Psest_3949 0.16 -0.6 4,118,125 - Psest_3949 0.16 +0.6 4,118,134 + Psest_3949 0.19 -0.3 4,118,134 + Psest_3949 0.19 +0.1 4,118,134 + Psest_3949 0.19 +2.6 4,118,135 - Psest_3949 0.19 -0.3 4,118,135 - Psest_3949 0.19 +0.6 4,118,196 + Psest_3949 0.33 +0.6 4,118,197 - Psest_3949 0.33 -0.4 4,118,203 + Psest_3949 0.35 +1.7 4,118,203 + Psest_3949 0.35 -0.4 4,118,203 + Psest_3949 0.35 +0.2 4,118,203 + Psest_3949 0.35 -0.7 4,118,203 + Psest_3949 0.35 -1.1 4,118,203 + Psest_3949 0.35 +0.4 4,118,203 + Psest_3949 0.35 -0.2 4,118,203 + Psest_3949 0.35 +1.2 4,118,203 + Psest_3949 0.35 +0.9 4,118,203 + Psest_3949 0.35 +0.8 4,118,203 + Psest_3949 0.35 -1.3 4,118,204 - Psest_3949 0.35 -2.1 4,118,204 - Psest_3949 0.35 -2.5 4,118,204 - Psest_3949 0.35 -2.3 4,118,204 - Psest_3949 0.35 -1.0 4,118,204 - Psest_3949 0.35 +0.3 4,118,204 - Psest_3949 0.35 +0.7 4,118,204 - Psest_3949 0.35 +1.0 4,118,204 - Psest_3949 0.35 +0.9 4,118,204 - Psest_3949 0.35 +1.4 4,118,204 - Psest_3949 0.35 +0.7 4,118,204 - Psest_3949 0.35 -0.1 4,118,308 + Psest_3949 0.59 -0.4 4,118,309 - Psest_3949 0.60 -1.9 4,118,400 + Psest_3949 0.81 -1.9 4,118,604 + Psest_3950 0.26 -1.6 4,118,604 + Psest_3950 0.26 +0.8 4,118,605 - Psest_3950 0.26 -0.0 4,118,605 - Psest_3950 0.26 -0.1 4,118,610 + Psest_3950 0.28 +0.1 4,118,610 + Psest_3950 0.28 +0.4 4,118,610 + Psest_3950 0.28 -1.1 4,118,610 + Psest_3950 0.28 +0.7 4,118,610 + Psest_3950 0.28 -0.5 4,118,611 - Psest_3950 0.28 -0.2 4,118,613 - Psest_3950 0.28 -0.1 4,118,613 - Psest_3950 0.28 +0.4 4,118,772 + Psest_3950 0.65 -1.2
Or see this region's nucleotide sequence