Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0318 and Psest_0319 are separated by 93 nucleotides Psest_0319 and Psest_0320 are separated by 174 nucleotides
Psest_0318: Psest_0318 - NAD-dependent DNA ligase (contains BRCT domain type II), at 340,356 to 342,020
_0318
Psest_0319: Psest_0319 - Predicted ferric reductase, at 342,114 to 343,445
_0319
Psest_0320: Psest_0320 - ABC-type multidrug transport system, ATPase component, at 343,620 to 344,543
_0320
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.114 kb on - strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.229 kb on + strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.598 kb on - strand, within Psest_0318 at 341.884 kb on + strand at 341.885 kb on - strand at 341.885 kb on - strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.122 kb on + strand at 342.123 kb on - strand at 342.297 kb on + strand, within Psest_0319 at 342.376 kb on + strand, within Psest_0319 at 342.377 kb on - strand, within Psest_0319 at 342.424 kb on - strand, within Psest_0319 at 342.569 kb on - strand, within Psest_0319 at 342.720 kb on - strand, within Psest_0319 at 342.897 kb on + strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.898 kb on - strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.925 kb on + strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 342.926 kb on - strand, within Psest_0319 at 343.016 kb on - strand, within Psest_0319 at 343.222 kb on + strand, within Psest_0319 at 343.223 kb on - strand, within Psest_0319 at 343.321 kb on + strand at 343.321 kb on + strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.322 kb on - strand at 343.423 kb on + strand at 343.423 kb on + strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.424 kb on - strand at 343.434 kb on + strand at 343.434 kb on + strand at 343.434 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.496 kb on + strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.497 kb on - strand at 343.579 kb on + strand at 343.580 kb on - strand at 343.583 kb on + strand at 343.659 kb on + strand at 343.659 kb on + strand at 343.660 kb on - strand at 343.660 kb on - strand at 344.196 kb on + strand, within Psest_0320 at 344.196 kb on + strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320 at 344.197 kb on - strand, within Psest_0320
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 341,114 - Psest_0318 0.46 +0.9 341,114 - Psest_0318 0.46 -0.8 341,114 - Psest_0318 0.46 -2.0 341,229 + Psest_0318 0.52 +0.7 341,229 + Psest_0318 0.52 +1.4 341,229 + Psest_0318 0.52 -0.6 341,229 + Psest_0318 0.52 -1.1 341,598 - Psest_0318 0.75 -0.5 341,598 - Psest_0318 0.75 -1.0 341,884 + -0.8 341,885 - -1.1 341,885 - -1.9 342,122 + -0.8 342,122 + -0.2 342,122 + -2.3 342,123 - +0.6 342,297 + Psest_0319 0.14 -1.5 342,376 + Psest_0319 0.20 -0.2 342,377 - Psest_0319 0.20 -1.2 342,424 - Psest_0319 0.23 +0.4 342,569 - Psest_0319 0.34 -1.9 342,720 - Psest_0319 0.45 -0.0 342,897 + Psest_0319 0.59 -0.7 342,898 - Psest_0319 0.59 -0.0 342,898 - Psest_0319 0.59 +0.5 342,898 - Psest_0319 0.59 -3.0 342,898 - Psest_0319 0.59 +0.1 342,925 + Psest_0319 0.61 -1.7 342,925 + Psest_0319 0.61 -1.7 342,926 - Psest_0319 0.61 -0.6 342,926 - Psest_0319 0.61 -0.7 342,926 - Psest_0319 0.61 -0.6 343,016 - Psest_0319 0.68 -0.3 343,222 + Psest_0319 0.83 -1.9 343,223 - Psest_0319 0.83 +1.2 343,321 + -1.2 343,321 + +0.1 343,322 - -0.2 343,322 - +1.2 343,322 - -0.3 343,322 - +0.4 343,423 + -1.6 343,423 + -1.4 343,424 - +1.1 343,424 - +0.9 343,424 - +1.7 343,424 - -2.6 343,434 + +2.2 343,434 + +1.5 343,434 + -1.1 343,496 + -0.5 343,496 + -1.3 343,496 + +1.0 343,496 + +1.3 343,496 + +0.7 343,496 + -0.2 343,496 + +1.0 343,496 + +0.2 343,496 + +2.8 343,496 + -0.7 343,496 + +0.3 343,496 + -1.4 343,496 + -0.2 343,496 + +0.8 343,496 + -1.0 343,496 + -0.4 343,496 + -0.1 343,496 + -0.7 343,496 + -1.1 343,496 + +0.6 343,496 + -0.8 343,496 + -1.1 343,496 + +0.2 343,496 + -1.3 343,496 + -0.4 343,496 + +1.8 343,496 + +0.5 343,496 + -0.8 343,496 + +0.2 343,496 + -0.6 343,496 + -1.4 343,496 + -1.1 343,496 + -0.5 343,496 + +0.7 343,496 + +1.5 343,497 - -1.4 343,497 - +1.3 343,497 - -0.8 343,497 - -0.9 343,497 - +0.1 343,497 - +1.1 343,497 - -0.7 343,497 - -1.2 343,497 - -1.0 343,497 - +1.6 343,497 - +0.4 343,497 - +1.1 343,497 - +0.6 343,497 - -0.3 343,497 - +0.6 343,497 - -0.5 343,497 - +0.2 343,497 - -0.1 343,497 - -0.3 343,497 - +0.1 343,497 - +1.6 343,497 - -2.8 343,497 - +1.5 343,497 - +0.3 343,497 - +0.8 343,497 - -0.1 343,497 - +0.9 343,497 - +0.5 343,497 - +0.3 343,497 - -0.4 343,497 - -0.6 343,497 - -1.0 343,579 + -0.8 343,580 - -0.8 343,583 + -0.7 343,659 + -1.1 343,659 + -0.1 343,660 - +0.9 343,660 - +0.9 344,196 + Psest_0320 0.62 -0.1 344,196 + Psest_0320 0.62 -2.0 344,197 - Psest_0320 0.62 +1.2 344,197 - Psest_0320 0.62 -0.1 344,197 - Psest_0320 0.62 +2.4 344,197 - Psest_0320 0.62 -1.6 344,197 - Psest_0320 0.62 -1.7 344,197 - Psest_0320 0.62 +2.2 344,197 - Psest_0320 0.62 +0.8
Or see this region's nucleotide sequence