Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3183 and Psest_3184 overlap by 4 nucleotides Psest_3184 and Psest_3185 overlap by 4 nucleotides
Psest_3183: Psest_3183 - hypothetical protein, at 3,354,998 to 3,356,551
_3183
Psest_3184: Psest_3184 - hypothetical protein, at 3,356,548 to 3,357,720
_3184
Psest_3185: Psest_3185 - MoxR-like ATPases, at 3,357,717 to 3,358,730
_3185
Position (kb)
3356
3357
3358 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3355.600 kb on - strand, within Psest_3183 at 3355.600 kb on - strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.613 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.646 kb on + strand, within Psest_3183 at 3355.647 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.167 kb on - strand, within Psest_3183 at 3356.248 kb on + strand, within Psest_3183 at 3356.309 kb on + strand, within Psest_3183 at 3356.466 kb on - strand at 3356.639 kb on - strand at 3356.706 kb on - strand, within Psest_3184 at 3357.034 kb on + strand, within Psest_3184 at 3357.035 kb on - strand, within Psest_3184 at 3357.227 kb on - strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.250 kb on + strand, within Psest_3184 at 3357.251 kb on - strand, within Psest_3184 at 3357.326 kb on - strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.362 kb on + strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.363 kb on - strand, within Psest_3184 at 3357.449 kb on + strand, within Psest_3184 at 3357.450 kb on - strand, within Psest_3184 at 3357.716 kb on + strand at 3357.716 kb on + strand at 3357.717 kb on - strand at 3357.832 kb on + strand, within Psest_3185 at 3358.027 kb on - strand, within Psest_3185 at 3358.142 kb on - strand, within Psest_3185 at 3358.461 kb on + strand, within Psest_3185
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 3,355,600 - Psest_3183 0.39 -1.7 3,355,600 - Psest_3183 0.39 -0.5 3,355,613 + Psest_3183 0.40 -0.0 3,355,613 + Psest_3183 0.40 -0.8 3,355,613 + Psest_3183 0.40 -0.0 3,355,613 + Psest_3183 0.40 -2.1 3,355,613 + Psest_3183 0.40 -1.6 3,355,646 + Psest_3183 0.42 -1.9 3,355,646 + Psest_3183 0.42 -0.3 3,355,647 - Psest_3183 0.42 -2.1 3,356,167 - Psest_3183 0.75 +1.2 3,356,167 - Psest_3183 0.75 +0.2 3,356,248 + Psest_3183 0.80 -0.2 3,356,309 + Psest_3183 0.84 -0.4 3,356,466 - -1.4 3,356,639 - -0.3 3,356,706 - Psest_3184 0.13 -0.8 3,357,034 + Psest_3184 0.41 +0.1 3,357,035 - Psest_3184 0.42 -0.5 3,357,227 - Psest_3184 0.58 -1.9 3,357,250 + Psest_3184 0.60 -1.3 3,357,250 + Psest_3184 0.60 -0.0 3,357,251 - Psest_3184 0.60 -0.5 3,357,326 - Psest_3184 0.66 -1.2 3,357,362 + Psest_3184 0.69 -1.3 3,357,362 + Psest_3184 0.69 +1.5 3,357,363 - Psest_3184 0.69 -0.9 3,357,363 - Psest_3184 0.69 -1.9 3,357,363 - Psest_3184 0.69 -0.0 3,357,363 - Psest_3184 0.69 -0.5 3,357,449 + Psest_3184 0.77 -1.8 3,357,450 - Psest_3184 0.77 +0.7 3,357,716 + +0.5 3,357,716 + -0.3 3,357,717 - -0.8 3,357,832 + Psest_3185 0.11 -0.1 3,358,027 - Psest_3185 0.31 -1.1 3,358,142 - Psest_3185 0.42 -0.0 3,358,461 + Psest_3185 0.73 -3.0
Or see this region's nucleotide sequence