Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2784

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2782 and Psest_2783 are separated by 302 nucleotidesPsest_2783 and Psest_2784 are separated by 180 nucleotidesPsest_2784 and Psest_2785 are separated by 91 nucleotidesPsest_2785 and Psest_2786 are separated by 172 nucleotidesPsest_2786 and Psest_2787 are separated by 52 nucleotides Psest_2782: Psest_2782 - Sigma 54 modulation protein / S30EA ribosomal protein., at 2,977,716 to 2,978,129 _2782 Psest_2783: Psest_2783 - hypothetical protein, at 2,978,432 to 2,978,692 _2783 Psest_2784: Psest_2784 - Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family, at 2,978,873 to 2,979,676 _2784 Psest_2785: Psest_2785 - hypothetical protein, at 2,979,768 to 2,979,902 _2785 Psest_2786: Psest_2786 - Domain of unknown function (DUF3597)., at 2,980,075 to 2,980,470 _2786 Psest_2787: Psest_2787 - Protein of unknown function (DUF2789)., at 2,980,523 to 2,980,759 _2787 Position (kb) 2978 2979 2980Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.129 kb on + strandat 2978.130 kb on - strandat 2978.130 kb on - strandat 2978.140 kb on + strandat 2978.140 kb on + strandat 2978.141 kb on - strandat 2978.141 kb on - strandat 2978.141 kb on - strandat 2978.151 kb on - strandat 2978.179 kb on + strandat 2978.180 kb on - strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.182 kb on + strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.183 kb on - strandat 2978.186 kb on + strandat 2978.186 kb on + strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.187 kb on - strandat 2978.340 kb on + strandat 2978.340 kb on + strandat 2978.340 kb on + strandat 2978.341 kb on - strandat 2978.341 kb on - strandat 2978.772 kb on + strandat 2978.813 kb on + strandat 2978.813 kb on + strandat 2978.814 kb on - strandat 2978.814 kb on - strandat 2978.841 kb on + strandat 2978.841 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.918 kb on + strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2978.919 kb on - strandat 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.084 kb on + strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.085 kb on - strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.094 kb on + strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.095 kb on - strand, within Psest_2784at 2979.258 kb on + strand, within Psest_2784at 2979.394 kb on + strand, within Psest_2784at 2979.709 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.934 kb on + strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2979.935 kb on - strandat 2980.033 kb on + strandat 2980.034 kb on - strandat 2980.034 kb on - strandat 2980.149 kb on + strand, within Psest_2786

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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2,978,129 + +0.3
2,978,129 + +0.8
2,978,129 + +0.8
2,978,129 + +0.9
2,978,129 + +1.4
2,978,129 + +2.0
2,978,129 + +1.3
2,978,130 - +1.2
2,978,130 - +1.7
2,978,140 + +0.0
2,978,140 + +1.0
2,978,141 - -0.7
2,978,141 - +0.2
2,978,141 - +1.2
2,978,151 - -1.2
2,978,179 + -0.0
2,978,180 - +1.3
2,978,182 + -0.3
2,978,182 + +0.9
2,978,182 + +0.7
2,978,182 + -0.5
2,978,182 + -1.7
2,978,182 + -0.5
2,978,182 + +0.7
2,978,183 - +1.2
2,978,183 - -2.4
2,978,183 - +1.4
2,978,183 - -0.4
2,978,183 - +0.3
2,978,183 - +0.9
2,978,186 + +0.0
2,978,186 + -0.4
2,978,187 - +0.6
2,978,187 - -1.2
2,978,187 - +0.1
2,978,187 - -1.0
2,978,187 - +0.7
2,978,187 - -1.8
2,978,187 - +1.8
2,978,187 - -2.1
2,978,187 - -0.4
2,978,187 - -0.1
2,978,340 + -0.4
2,978,340 + -2.5
2,978,340 + -1.5
2,978,341 - -0.8
2,978,341 - -1.0
2,978,772 + -0.4
2,978,813 + +0.1
2,978,813 + -1.8
2,978,814 - +2.4
2,978,814 - -0.2
2,978,841 + +0.6
2,978,841 + -0.8
2,978,918 + -0.4
2,978,918 + +1.9
2,978,918 + -0.2
2,978,918 + +2.0
2,978,918 + -2.1
2,978,918 + +0.4
2,978,918 + -1.1
2,978,918 + +1.9
2,978,918 + +0.8
2,978,918 + +0.2
2,978,918 + -0.7
2,978,918 + -0.8
2,978,918 + +1.9
2,978,918 + +0.4
2,978,918 + +1.0
2,978,919 - -0.2
2,978,919 - -1.7
2,978,919 - -0.9
2,978,919 - -1.3
2,978,919 - +0.7
2,978,919 - -0.3
2,978,919 - +1.2
2,978,919 - -0.2
2,979,084 + Psest_2784 0.26 +1.0
2,979,084 + Psest_2784 0.26 -1.4
2,979,084 + Psest_2784 0.26 -0.2
2,979,084 + Psest_2784 0.26 -0.4
2,979,084 + Psest_2784 0.26 +0.2
2,979,084 + Psest_2784 0.26 -1.0
2,979,084 + Psest_2784 0.26 -1.7
2,979,084 + Psest_2784 0.26 +0.7
2,979,084 + Psest_2784 0.26 +3.7
2,979,084 + Psest_2784 0.26 -2.4
2,979,084 + Psest_2784 0.26 -1.8
2,979,085 - Psest_2784 0.26 -0.6
2,979,085 - Psest_2784 0.26 +2.2
2,979,085 - Psest_2784 0.26 -2.1
2,979,085 - Psest_2784 0.26 -1.3
2,979,085 - Psest_2784 0.26 -0.1
2,979,085 - Psest_2784 0.26 -0.9
2,979,085 - Psest_2784 0.26 -2.0
2,979,085 - Psest_2784 0.26 +0.3
2,979,085 - Psest_2784 0.26 -0.4
2,979,085 - Psest_2784 0.26 +0.8
2,979,085 - Psest_2784 0.26 -0.9
2,979,085 - Psest_2784 0.26 -1.7
2,979,085 - Psest_2784 0.26 -1.3
2,979,085 - Psest_2784 0.26 -2.1
2,979,085 - Psest_2784 0.26 -0.8
2,979,085 - Psest_2784 0.26 -1.4
2,979,085 - Psest_2784 0.26 +0.6
2,979,094 + Psest_2784 0.27 -1.2
2,979,094 + Psest_2784 0.27 -0.3
2,979,094 + Psest_2784 0.27 -1.0
2,979,094 + Psest_2784 0.27 -0.0
2,979,095 - Psest_2784 0.28 +0.3
2,979,095 - Psest_2784 0.28 -0.8
2,979,095 - Psest_2784 0.28 -0.2
2,979,095 - Psest_2784 0.28 -0.1
2,979,095 - Psest_2784 0.28 +0.8
2,979,095 - Psest_2784 0.28 -0.7
2,979,095 - Psest_2784 0.28 -1.0
2,979,095 - Psest_2784 0.28 +0.2
2,979,095 - Psest_2784 0.28 +0.8
2,979,095 - Psest_2784 0.28 -0.6
2,979,095 - Psest_2784 0.28 -1.1
2,979,258 + Psest_2784 0.48 +1.0
2,979,394 + Psest_2784 0.65 -0.7
2,979,709 + -1.8
2,979,934 + -1.1
2,979,934 + +0.1
2,979,934 + -1.0
2,979,934 + -0.6
2,979,935 - -2.8
2,979,935 - -0.8
2,979,935 - -0.0
2,979,935 - -0.4
2,979,935 - -1.3
2,979,935 - +0.6
2,979,935 - +1.1
2,979,935 - -0.2
2,979,935 - -1.5
2,980,033 + +0.9
2,980,034 - +0.8
2,980,034 - +0.0
2,980,149 + Psest_2786 0.19 -1.0

Or see this region's nucleotide sequence