Experiment: Carbenicillin 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2439 and Psest_2440 are separated by 38 nucleotides Psest_2440 and Psest_2441 are separated by 66 nucleotides
Psest_2439: Psest_2439 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) , at 2,607,195 to 2,608,289
_2439
Psest_2440: Psest_2440 - isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data) , at 2,608,328 to 2,609,479
_2440
Psest_2441: Psest_2441 - hypothetical protein, at 2,609,546 to 2,610,103
_2441
Position (kb)
2608
2609
2610 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2607.468 kb on + strand, within Psest_2439 at 2607.469 kb on - strand, within Psest_2439 at 2607.483 kb on + strand, within Psest_2439 at 2607.483 kb on + strand, within Psest_2439 at 2607.484 kb on - strand, within Psest_2439 at 2607.602 kb on + strand, within Psest_2439 at 2607.625 kb on - strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.648 kb on + strand, within Psest_2439 at 2607.649 kb on - strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.684 kb on + strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2607.685 kb on - strand, within Psest_2439 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.517 kb on + strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.518 kb on - strand, within Psest_2440 at 2608.520 kb on - strand, within Psest_2440 at 2608.526 kb on + strand, within Psest_2440 at 2608.527 kb on - strand, within Psest_2440 at 2608.527 kb on - strand, within Psest_2440 at 2608.632 kb on - strand, within Psest_2440 at 2609.120 kb on + strand, within Psest_2440 at 2609.469 kb on - strand at 2609.469 kb on - strand at 2609.469 kb on - strand at 2609.475 kb on + strand at 2609.476 kb on - strand at 2609.477 kb on + strand at 2609.478 kb on - strand at 2609.669 kb on + strand, within Psest_2441 at 2609.724 kb on - strand, within Psest_2441 at 2609.735 kb on - strand, within Psest_2441 at 2609.735 kb on - strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.859 kb on + strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.860 kb on - strand, within Psest_2441 at 2609.945 kb on + strand, within Psest_2441 at 2609.946 kb on - strand, within Psest_2441 at 2609.946 kb on - strand, within Psest_2441 at 2610.010 kb on + strand, within Psest_2441 at 2610.010 kb on + strand, within Psest_2441 at 2610.034 kb on - strand, within Psest_2441 at 2610.050 kb on + strand at 2610.239 kb on + strand at 2610.239 kb on + strand at 2610.239 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.384 kb on + strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.385 kb on - strand at 2610.419 kb on + strand at 2610.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml remove 2,607,468 + Psest_2439 0.25 -1.7 2,607,469 - Psest_2439 0.25 +0.3 2,607,483 + Psest_2439 0.26 -0.7 2,607,483 + Psest_2439 0.26 +0.4 2,607,484 - Psest_2439 0.26 -1.2 2,607,602 + Psest_2439 0.37 -0.5 2,607,625 - Psest_2439 0.39 +0.3 2,607,648 + Psest_2439 0.41 +0.2 2,607,648 + Psest_2439 0.41 -0.3 2,607,648 + Psest_2439 0.41 +1.2 2,607,649 - Psest_2439 0.41 -1.3 2,607,684 + Psest_2439 0.45 +1.5 2,607,684 + Psest_2439 0.45 -1.6 2,607,684 + Psest_2439 0.45 +0.3 2,607,684 + Psest_2439 0.45 +0.7 2,607,684 + Psest_2439 0.45 +1.4 2,607,684 + Psest_2439 0.45 -1.4 2,607,684 + Psest_2439 0.45 -1.0 2,607,684 + Psest_2439 0.45 -0.7 2,607,685 - Psest_2439 0.45 +0.2 2,607,685 - Psest_2439 0.45 -0.2 2,607,685 - Psest_2439 0.45 -1.5 2,607,685 - Psest_2439 0.45 -1.0 2,607,685 - Psest_2439 0.45 -1.0 2,607,685 - Psest_2439 0.45 +1.0 2,607,685 - Psest_2439 0.45 -1.9 2,607,685 - Psest_2439 0.45 -0.2 2,607,685 - Psest_2439 0.45 -2.0 2,607,685 - Psest_2439 0.45 -1.4 2,607,685 - Psest_2439 0.45 +1.5 2,607,685 - Psest_2439 0.45 -1.5 2,607,685 - Psest_2439 0.45 -1.3 2,607,685 - Psest_2439 0.45 -0.0 2,608,517 + Psest_2440 0.16 -1.5 2,608,517 + Psest_2440 0.16 -2.6 2,608,517 + Psest_2440 0.16 -2.7 2,608,517 + Psest_2440 0.16 +0.2 2,608,517 + Psest_2440 0.16 -1.9 2,608,517 + Psest_2440 0.16 +0.4 2,608,517 + Psest_2440 0.16 +0.4 2,608,517 + Psest_2440 0.16 -0.2 2,608,517 + Psest_2440 0.16 +0.0 2,608,518 - Psest_2440 0.16 -0.6 2,608,518 - Psest_2440 0.16 +0.2 2,608,518 - Psest_2440 0.16 -1.7 2,608,518 - Psest_2440 0.16 -1.3 2,608,518 - Psest_2440 0.16 +2.1 2,608,518 - Psest_2440 0.16 -0.9 2,608,520 - Psest_2440 0.17 +0.7 2,608,526 + Psest_2440 0.17 -2.6 2,608,527 - Psest_2440 0.17 +0.6 2,608,527 - Psest_2440 0.17 +0.4 2,608,632 - Psest_2440 0.26 -0.2 2,609,120 + Psest_2440 0.69 -1.3 2,609,469 - +0.8 2,609,469 - -2.7 2,609,469 - +0.1 2,609,475 + -0.3 2,609,476 - -2.7 2,609,477 + +2.1 2,609,478 - -0.0 2,609,669 + Psest_2441 0.22 -0.7 2,609,724 - Psest_2441 0.32 -1.6 2,609,735 - Psest_2441 0.34 -1.5 2,609,735 - Psest_2441 0.34 +0.0 2,609,859 + Psest_2441 0.56 -0.5 2,609,859 + Psest_2441 0.56 -1.9 2,609,859 + Psest_2441 0.56 -0.1 2,609,860 - Psest_2441 0.56 -0.4 2,609,860 - Psest_2441 0.56 +0.3 2,609,860 - Psest_2441 0.56 -0.4 2,609,860 - Psest_2441 0.56 +0.2 2,609,860 - Psest_2441 0.56 +0.8 2,609,860 - Psest_2441 0.56 -0.4 2,609,860 - Psest_2441 0.56 +0.6 2,609,860 - Psest_2441 0.56 -0.6 2,609,860 - Psest_2441 0.56 -0.1 2,609,860 - Psest_2441 0.56 +1.5 2,609,860 - Psest_2441 0.56 -1.0 2,609,945 + Psest_2441 0.72 -1.7 2,609,946 - Psest_2441 0.72 +0.8 2,609,946 - Psest_2441 0.72 -0.3 2,610,010 + Psest_2441 0.83 +0.5 2,610,010 + Psest_2441 0.83 +3.1 2,610,034 - Psest_2441 0.87 -0.1 2,610,050 + +0.3 2,610,239 + +0.1 2,610,239 + -1.3 2,610,239 + -0.4 2,610,384 + -0.7 2,610,384 + -1.1 2,610,384 + -0.3 2,610,384 + -1.8 2,610,385 - +1.1 2,610,385 - -1.8 2,610,385 - -1.6 2,610,385 - -1.4 2,610,385 - +0.5 2,610,385 - -0.4 2,610,419 + +0.2 2,610,468 - +0.5
Or see this region's nucleotide sequence