Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2440

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2439 and Psest_2440 are separated by 38 nucleotidesPsest_2440 and Psest_2441 are separated by 66 nucleotides Psest_2439: Psest_2439 - 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data), at 2,607,195 to 2,608,289 _2439 Psest_2440: Psest_2440 - isobutyryl-CoA dehydrogenase (EC 1.3.8.5) (from data), at 2,608,328 to 2,609,479 _2440 Psest_2441: Psest_2441 - hypothetical protein, at 2,609,546 to 2,610,103 _2441 Position (kb) 2608 2609 2610Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2607.468 kb on + strand, within Psest_2439at 2607.469 kb on - strand, within Psest_2439at 2607.483 kb on + strand, within Psest_2439at 2607.483 kb on + strand, within Psest_2439at 2607.484 kb on - strand, within Psest_2439at 2607.602 kb on + strand, within Psest_2439at 2607.625 kb on - strand, within Psest_2439at 2607.648 kb on + strand, within Psest_2439at 2607.648 kb on + strand, within Psest_2439at 2607.648 kb on + strand, within Psest_2439at 2607.649 kb on - strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.684 kb on + strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2607.685 kb on - strand, within Psest_2439at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.517 kb on + strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.518 kb on - strand, within Psest_2440at 2608.520 kb on - strand, within Psest_2440at 2608.526 kb on + strand, within Psest_2440at 2608.527 kb on - strand, within Psest_2440at 2608.527 kb on - strand, within Psest_2440at 2608.632 kb on - strand, within Psest_2440at 2609.120 kb on + strand, within Psest_2440at 2609.469 kb on - strandat 2609.469 kb on - strandat 2609.469 kb on - strandat 2609.475 kb on + strandat 2609.476 kb on - strandat 2609.477 kb on + strandat 2609.478 kb on - strandat 2609.669 kb on + strand, within Psest_2441at 2609.724 kb on - strand, within Psest_2441at 2609.735 kb on - strand, within Psest_2441at 2609.735 kb on - strand, within Psest_2441at 2609.859 kb on + strand, within Psest_2441at 2609.859 kb on + strand, within Psest_2441at 2609.859 kb on + strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.860 kb on - strand, within Psest_2441at 2609.945 kb on + strand, within Psest_2441at 2609.946 kb on - strand, within Psest_2441at 2609.946 kb on - strand, within Psest_2441at 2610.010 kb on + strand, within Psest_2441at 2610.010 kb on + strand, within Psest_2441at 2610.034 kb on - strand, within Psest_2441at 2610.050 kb on + strandat 2610.239 kb on + strandat 2610.239 kb on + strandat 2610.239 kb on + strandat 2610.384 kb on + strandat 2610.384 kb on + strandat 2610.384 kb on + strandat 2610.384 kb on + strandat 2610.385 kb on - strandat 2610.385 kb on - strandat 2610.385 kb on - strandat 2610.385 kb on - strandat 2610.385 kb on - strandat 2610.385 kb on - strandat 2610.419 kb on + strandat 2610.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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2,607,468 + Psest_2439 0.25 -1.7
2,607,469 - Psest_2439 0.25 +0.3
2,607,483 + Psest_2439 0.26 -0.7
2,607,483 + Psest_2439 0.26 +0.4
2,607,484 - Psest_2439 0.26 -1.2
2,607,602 + Psest_2439 0.37 -0.5
2,607,625 - Psest_2439 0.39 +0.3
2,607,648 + Psest_2439 0.41 +0.2
2,607,648 + Psest_2439 0.41 -0.3
2,607,648 + Psest_2439 0.41 +1.2
2,607,649 - Psest_2439 0.41 -1.3
2,607,684 + Psest_2439 0.45 +1.5
2,607,684 + Psest_2439 0.45 -1.6
2,607,684 + Psest_2439 0.45 +0.3
2,607,684 + Psest_2439 0.45 +0.7
2,607,684 + Psest_2439 0.45 +1.4
2,607,684 + Psest_2439 0.45 -1.4
2,607,684 + Psest_2439 0.45 -1.0
2,607,684 + Psest_2439 0.45 -0.7
2,607,685 - Psest_2439 0.45 +0.2
2,607,685 - Psest_2439 0.45 -0.2
2,607,685 - Psest_2439 0.45 -1.5
2,607,685 - Psest_2439 0.45 -1.0
2,607,685 - Psest_2439 0.45 -1.0
2,607,685 - Psest_2439 0.45 +1.0
2,607,685 - Psest_2439 0.45 -1.9
2,607,685 - Psest_2439 0.45 -0.2
2,607,685 - Psest_2439 0.45 -2.0
2,607,685 - Psest_2439 0.45 -1.4
2,607,685 - Psest_2439 0.45 +1.5
2,607,685 - Psest_2439 0.45 -1.5
2,607,685 - Psest_2439 0.45 -1.3
2,607,685 - Psest_2439 0.45 -0.0
2,608,517 + Psest_2440 0.16 -1.5
2,608,517 + Psest_2440 0.16 -2.6
2,608,517 + Psest_2440 0.16 -2.7
2,608,517 + Psest_2440 0.16 +0.2
2,608,517 + Psest_2440 0.16 -1.9
2,608,517 + Psest_2440 0.16 +0.4
2,608,517 + Psest_2440 0.16 +0.4
2,608,517 + Psest_2440 0.16 -0.2
2,608,517 + Psest_2440 0.16 +0.0
2,608,518 - Psest_2440 0.16 -0.6
2,608,518 - Psest_2440 0.16 +0.2
2,608,518 - Psest_2440 0.16 -1.7
2,608,518 - Psest_2440 0.16 -1.3
2,608,518 - Psest_2440 0.16 +2.1
2,608,518 - Psest_2440 0.16 -0.9
2,608,520 - Psest_2440 0.17 +0.7
2,608,526 + Psest_2440 0.17 -2.6
2,608,527 - Psest_2440 0.17 +0.6
2,608,527 - Psest_2440 0.17 +0.4
2,608,632 - Psest_2440 0.26 -0.2
2,609,120 + Psest_2440 0.69 -1.3
2,609,469 - +0.8
2,609,469 - -2.7
2,609,469 - +0.1
2,609,475 + -0.3
2,609,476 - -2.7
2,609,477 + +2.1
2,609,478 - -0.0
2,609,669 + Psest_2441 0.22 -0.7
2,609,724 - Psest_2441 0.32 -1.6
2,609,735 - Psest_2441 0.34 -1.5
2,609,735 - Psest_2441 0.34 +0.0
2,609,859 + Psest_2441 0.56 -0.5
2,609,859 + Psest_2441 0.56 -1.9
2,609,859 + Psest_2441 0.56 -0.1
2,609,860 - Psest_2441 0.56 -0.4
2,609,860 - Psest_2441 0.56 +0.3
2,609,860 - Psest_2441 0.56 -0.4
2,609,860 - Psest_2441 0.56 +0.2
2,609,860 - Psest_2441 0.56 +0.8
2,609,860 - Psest_2441 0.56 -0.4
2,609,860 - Psest_2441 0.56 +0.6
2,609,860 - Psest_2441 0.56 -0.6
2,609,860 - Psest_2441 0.56 -0.1
2,609,860 - Psest_2441 0.56 +1.5
2,609,860 - Psest_2441 0.56 -1.0
2,609,945 + Psest_2441 0.72 -1.7
2,609,946 - Psest_2441 0.72 +0.8
2,609,946 - Psest_2441 0.72 -0.3
2,610,010 + Psest_2441 0.83 +0.5
2,610,010 + Psest_2441 0.83 +3.1
2,610,034 - Psest_2441 0.87 -0.1
2,610,050 + +0.3
2,610,239 + +0.1
2,610,239 + -1.3
2,610,239 + -0.4
2,610,384 + -0.7
2,610,384 + -1.1
2,610,384 + -0.3
2,610,384 + -1.8
2,610,385 - +1.1
2,610,385 - -1.8
2,610,385 - -1.6
2,610,385 - -1.4
2,610,385 - +0.5
2,610,385 - -0.4
2,610,419 + +0.2
2,610,468 - +0.5

Or see this region's nucleotide sequence