Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0157

Experiment: Carbenicillin 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0155 and Psest_0156 are separated by 98 nucleotidesPsest_0156 and Psest_0157 are separated by 86 nucleotidesPsest_0157 and Psest_0158 are separated by 230 nucleotidesPsest_0158 and Psest_0159 are separated by 3 nucleotides Psest_0155: Psest_0155 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 153,628 to 154,371 _0155 Psest_0156: Psest_0156 - imidazoleglycerol phosphate synthase, cyclase subunit, at 154,470 to 155,240 _0156 Psest_0157: Psest_0157 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 155,327 to 156,076 _0157 Psest_0158: Psest_0158 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 156,307 to 157,053 _0158 Psest_0159: Psest_0159 - Uncharacterized protein conserved in bacteria, at 157,057 to 157,848 _0159 Position (kb) 155 156 157Strain fitness (log2 ratio) -2 -1 0 1 2 3at 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.357 kb on + strandat 154.358 kb on - strandat 154.412 kb on + strandat 154.412 kb on + strandat 154.412 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.419 kb on + strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.420 kb on - strandat 154.670 kb on - strand, within Psest_0156at 155.184 kb on + strandat 155.184 kb on + strandat 155.184 kb on + strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.185 kb on - strandat 155.208 kb on + strandat 155.209 kb on - strandat 155.266 kb on + strandat 155.267 kb on - strandat 155.267 kb on - strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.277 kb on + strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.278 kb on - strandat 155.368 kb on - strandat 155.438 kb on + strand, within Psest_0157at 155.439 kb on - strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.540 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.576 kb on + strand, within Psest_0157at 155.577 kb on - strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.603 kb on + strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.604 kb on - strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.744 kb on + strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.745 kb on - strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.759 kb on + strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.760 kb on - strand, within Psest_0157at 155.951 kb on - strand, within Psest_0157at 155.963 kb on + strand, within Psest_0157at 155.964 kb on - strand, within Psest_0157at 156.069 kb on - strandat 156.069 kb on - strandat 156.323 kb on + strandat 156.344 kb on + strandat 156.345 kb on - strandat 156.345 kb on - strandat 156.345 kb on - strandat 156.442 kb on + strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.443 kb on - strand, within Psest_0158at 156.553 kb on + strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.554 kb on - strand, within Psest_0158at 156.652 kb on - strand, within Psest_0158at 156.736 kb on + strand, within Psest_0158at 156.736 kb on + strand, within Psest_0158at 156.874 kb on + strand, within Psest_0158at 156.987 kb on - strandat 157.059 kb on - strandat 157.065 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.008 mg/ml
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154,357 + -0.1
154,357 + +0.1
154,357 + -1.4
154,357 + -1.0
154,357 + -0.5
154,358 - +0.5
154,412 + +0.5
154,412 + -0.4
154,412 + -0.4
154,419 + -1.5
154,419 + -0.8
154,419 + -0.8
154,419 + -0.7
154,419 + +1.8
154,420 - +0.8
154,420 - +0.2
154,420 - -1.0
154,420 - +2.5
154,420 - -1.1
154,670 - Psest_0156 0.26 +0.7
155,184 + -0.0
155,184 + -0.6
155,184 + +0.5
155,185 - -0.9
155,185 - +1.6
155,185 - -0.6
155,185 - +2.1
155,208 + +1.0
155,209 - -0.1
155,266 + -0.1
155,267 - +0.6
155,267 - +1.8
155,277 + -0.2
155,277 + -0.1
155,277 + -0.7
155,277 + -0.2
155,277 + +0.5
155,278 - +1.3
155,278 - -0.3
155,278 - +1.0
155,278 - +0.6
155,278 - +2.3
155,278 - +2.1
155,368 - -0.9
155,438 + Psest_0157 0.15 -0.6
155,439 - Psest_0157 0.15 +0.2
155,540 + Psest_0157 0.28 -2.4
155,540 + Psest_0157 0.28 -1.8
155,576 + Psest_0157 0.33 -0.4
155,576 + Psest_0157 0.33 +1.6
155,576 + Psest_0157 0.33 +2.5
155,577 - Psest_0157 0.33 +0.9
155,603 + Psest_0157 0.37 +1.4
155,603 + Psest_0157 0.37 -0.6
155,603 + Psest_0157 0.37 -1.1
155,603 + Psest_0157 0.37 -1.0
155,604 - Psest_0157 0.37 +2.1
155,604 - Psest_0157 0.37 +2.8
155,744 + Psest_0157 0.56 +1.1
155,744 + Psest_0157 0.56 -0.8
155,744 + Psest_0157 0.56 -0.1
155,744 + Psest_0157 0.56 +1.2
155,744 + Psest_0157 0.56 +0.3
155,744 + Psest_0157 0.56 -0.6
155,745 - Psest_0157 0.56 -0.1
155,745 - Psest_0157 0.56 +0.7
155,745 - Psest_0157 0.56 +2.3
155,759 + Psest_0157 0.58 -1.5
155,759 + Psest_0157 0.58 +2.7
155,760 - Psest_0157 0.58 +1.5
155,760 - Psest_0157 0.58 -0.5
155,760 - Psest_0157 0.58 +0.5
155,760 - Psest_0157 0.58 +0.2
155,951 - Psest_0157 0.83 +1.4
155,963 + Psest_0157 0.85 -1.6
155,964 - Psest_0157 0.85 +1.1
156,069 - -0.9
156,069 - -1.0
156,323 + +1.5
156,344 + +1.7
156,345 - -0.9
156,345 - +0.3
156,345 - +0.3
156,442 + Psest_0158 0.18 +1.0
156,443 - Psest_0158 0.18 -1.6
156,443 - Psest_0158 0.18 +0.9
156,443 - Psest_0158 0.18 +1.2
156,443 - Psest_0158 0.18 +0.6
156,553 + Psest_0158 0.33 -0.2
156,554 - Psest_0158 0.33 -2.7
156,554 - Psest_0158 0.33 -0.5
156,554 - Psest_0158 0.33 +0.6
156,652 - Psest_0158 0.46 -0.5
156,736 + Psest_0158 0.57 -2.2
156,736 + Psest_0158 0.57 +2.0
156,874 + Psest_0158 0.76 -0.2
156,987 - +0.8
157,059 - -1.1
157,065 - +0.0

Or see this region's nucleotide sequence