Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0597 and Psest_0598 overlap by 4 nucleotides Psest_0598 and Psest_0600 are separated by 559 nucleotides
Psest_0597: Psest_0597 - RND family efflux transporter, MFP subunit, at 648,093 to 649,544
_0597
Psest_0598: Psest_0598 - Outer membrane protein, at 649,541 to 650,794
_0598
Psest_0600: Psest_0600 - copper-(or silver)-translocating P-type ATPase, at 651,354 to 653,717
_0600
Position (kb) 649
650
651 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 648.671 kb on + strand, within Psest_0597 at 648.672 kb on - strand, within Psest_0597 at 648.696 kb on + strand, within Psest_0597 at 648.697 kb on - strand, within Psest_0597 at 648.699 kb on + strand, within Psest_0597 at 648.700 kb on - strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.833 kb on + strand, within Psest_0597 at 648.834 kb on - strand, within Psest_0597 at 648.861 kb on + strand, within Psest_0597 at 648.906 kb on + strand, within Psest_0597 at 648.907 kb on - strand, within Psest_0597 at 648.954 kb on + strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.139 kb on - strand, within Psest_0597 at 649.349 kb on + strand, within Psest_0597 at 649.377 kb on - strand, within Psest_0597 at 649.400 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.409 kb on - strand at 649.414 kb on + strand at 649.414 kb on + strand at 649.415 kb on - strand at 649.490 kb on + strand at 649.490 kb on + strand at 649.553 kb on - strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.613 kb on - strand at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.731 kb on - strand, within Psest_0598 at 649.774 kb on - strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.807 kb on - strand, within Psest_0598 at 649.962 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.090 kb on - strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.440 kb on + strand, within Psest_0598 at 650.441 kb on - strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.584 kb on + strand, within Psest_0598 at 650.585 kb on - strand, within Psest_0598 at 650.702 kb on + strand at 650.702 kb on + strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.703 kb on - strand at 650.763 kb on + strand at 650.763 kb on + strand at 650.763 kb on + strand at 650.779 kb on - strand at 650.782 kb on + strand at 650.782 kb on + strand at 650.783 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.872 kb on - strand at 650.874 kb on - strand at 650.917 kb on + strand at 650.946 kb on - strand at 650.989 kb on + strand at 651.009 kb on + strand at 651.009 kb on + strand at 651.009 kb on + strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.010 kb on - strand at 651.257 kb on + strand at 651.258 kb on - strand at 651.258 kb on - strand at 651.267 kb on + strand at 651.268 kb on - strand at 651.335 kb on - strand at 651.335 kb on - strand at 651.340 kb on + strand at 651.360 kb on + strand at 651.361 kb on - strand at 651.361 kb on - strand at 651.361 kb on - strand at 651.466 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.505 kb on + strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.506 kb on - strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.509 kb on + strand at 651.510 kb on - strand at 651.510 kb on - strand at 651.537 kb on - strand at 651.605 kb on + strand, within Psest_0600 at 651.606 kb on - strand, within Psest_0600 at 651.651 kb on + strand, within Psest_0600 at 651.651 kb on + strand, within Psest_0600 at 651.691 kb on - strand, within Psest_0600 at 651.714 kb on + strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.715 kb on - strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.719 kb on + strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.720 kb on - strand, within Psest_0600 at 651.724 kb on - strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.732 kb on + strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.733 kb on - strand, within Psest_0600 at 651.738 kb on - strand, within Psest_0600
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 648,671 + Psest_0597 0.40 -2.2 648,672 - Psest_0597 0.40 +1.1 648,696 + Psest_0597 0.42 +0.2 648,697 - Psest_0597 0.42 +2.9 648,699 + Psest_0597 0.42 -0.5 648,700 - Psest_0597 0.42 +1.3 648,816 + Psest_0597 0.50 +0.9 648,816 + Psest_0597 0.50 -1.4 648,816 + Psest_0597 0.50 -0.3 648,817 - Psest_0597 0.50 -0.9 648,817 - Psest_0597 0.50 -0.5 648,817 - Psest_0597 0.50 +1.1 648,833 + Psest_0597 0.51 +0.6 648,834 - Psest_0597 0.51 +3.2 648,861 + Psest_0597 0.53 +0.6 648,906 + Psest_0597 0.56 +0.2 648,907 - Psest_0597 0.56 -0.3 648,954 + Psest_0597 0.59 +0.5 648,955 - Psest_0597 0.59 +3.5 648,955 - Psest_0597 0.59 +0.5 649,051 + Psest_0597 0.66 -1.4 649,051 + Psest_0597 0.66 +0.3 649,051 + Psest_0597 0.66 -0.3 649,052 - Psest_0597 0.66 -1.0 649,052 - Psest_0597 0.66 +0.3 649,139 - Psest_0597 0.72 +0.9 649,349 + Psest_0597 0.87 +1.0 649,377 - Psest_0597 0.88 +2.6 649,400 + +1.0 649,408 + +1.4 649,408 + -1.0 649,408 + -0.6 649,409 - -0.0 649,414 + +0.2 649,414 + -1.0 649,415 - +0.3 649,490 + -1.3 649,490 + -1.8 649,553 - -0.1 649,612 + -0.4 649,612 + +1.4 649,612 + +2.2 649,613 - +0.3 649,730 + Psest_0598 0.15 -1.1 649,730 + Psest_0598 0.15 -0.6 649,730 + Psest_0598 0.15 +0.1 649,730 + Psest_0598 0.15 -0.8 649,730 + Psest_0598 0.15 +0.1 649,731 - Psest_0598 0.15 -0.1 649,774 - Psest_0598 0.19 +0.4 649,806 + Psest_0598 0.21 -0.6 649,806 + Psest_0598 0.21 -2.4 649,807 - Psest_0598 0.21 -0.1 649,962 + Psest_0598 0.34 -0.6 650,085 + Psest_0598 0.43 +0.4 650,085 + Psest_0598 0.43 +2.1 650,085 + Psest_0598 0.43 +1.0 650,085 + Psest_0598 0.43 -1.0 650,085 + Psest_0598 0.43 -1.8 650,086 - Psest_0598 0.43 +0.2 650,086 - Psest_0598 0.43 -0.9 650,086 - Psest_0598 0.43 -2.0 650,089 + Psest_0598 0.44 +0.5 650,089 + Psest_0598 0.44 -2.9 650,089 + Psest_0598 0.44 +2.1 650,089 + Psest_0598 0.44 -1.3 650,090 - Psest_0598 0.44 -1.7 650,141 + Psest_0598 0.48 -2.3 650,141 + Psest_0598 0.48 -1.6 650,243 + Psest_0598 0.56 -0.3 650,243 + Psest_0598 0.56 +0.8 650,243 + Psest_0598 0.56 -1.9 650,244 - Psest_0598 0.56 -1.9 650,244 - Psest_0598 0.56 -0.2 650,244 - Psest_0598 0.56 -1.4 650,244 - Psest_0598 0.56 -0.4 650,244 - Psest_0598 0.56 -0.0 650,244 - Psest_0598 0.56 -1.2 650,320 - Psest_0598 0.62 +1.1 650,320 - Psest_0598 0.62 -0.5 650,320 - Psest_0598 0.62 +0.1 650,339 + Psest_0598 0.64 -2.0 650,339 + Psest_0598 0.64 +0.5 650,339 + Psest_0598 0.64 -0.4 650,339 + Psest_0598 0.64 -0.2 650,340 - Psest_0598 0.64 -0.7 650,340 - Psest_0598 0.64 -0.0 650,340 - Psest_0598 0.64 +2.6 650,440 + Psest_0598 0.72 +1.3 650,441 - Psest_0598 0.72 +2.1 650,584 + Psest_0598 0.83 -0.7 650,584 + Psest_0598 0.83 -0.5 650,584 + Psest_0598 0.83 -1.1 650,584 + Psest_0598 0.83 +0.0 650,585 - Psest_0598 0.83 +1.5 650,702 + +0.4 650,702 + +0.7 650,703 - -0.6 650,703 - -0.3 650,703 - -0.9 650,703 - -1.7 650,703 - -0.4 650,703 - +1.0 650,763 + -1.6 650,763 + +0.9 650,763 + +0.4 650,779 - -0.3 650,782 + -1.6 650,782 + +1.1 650,783 - +0.7 650,872 - +1.8 650,872 - +1.3 650,872 - -0.8 650,872 - -1.1 650,874 - +1.8 650,917 + -1.7 650,946 - +0.1 650,989 + -1.6 651,009 + +0.6 651,009 + +3.1 651,009 + +1.5 651,010 - -0.8 651,010 - +0.6 651,010 - -1.3 651,010 - +0.2 651,010 - +0.8 651,010 - -0.3 651,257 + -1.4 651,258 - +0.9 651,258 - -0.3 651,267 + -1.3 651,268 - +1.3 651,335 - -0.6 651,335 - -1.9 651,340 + -0.6 651,360 + +1.0 651,361 - -0.2 651,361 - +2.9 651,361 - -0.7 651,466 + +0.1 651,505 + -1.0 651,505 + +1.6 651,505 + +0.2 651,505 + -0.5 651,505 + +0.5 651,506 - -1.0 651,506 - -0.5 651,506 - +1.5 651,506 - +1.1 651,509 + +0.7 651,509 + -0.4 651,509 + -1.5 651,509 + +0.1 651,510 - -0.9 651,510 - +2.2 651,537 - -0.1 651,605 + Psest_0600 0.11 +0.9 651,606 - Psest_0600 0.11 -1.6 651,651 + Psest_0600 0.13 +1.9 651,651 + Psest_0600 0.13 -0.9 651,691 - Psest_0600 0.14 +0.8 651,714 + Psest_0600 0.15 +0.8 651,715 - Psest_0600 0.15 +0.0 651,715 - Psest_0600 0.15 -0.1 651,715 - Psest_0600 0.15 -2.5 651,715 - Psest_0600 0.15 +3.1 651,719 + Psest_0600 0.15 +1.3 651,719 + Psest_0600 0.15 +0.3 651,719 + Psest_0600 0.15 -1.7 651,719 + Psest_0600 0.15 -1.1 651,720 - Psest_0600 0.15 +1.9 651,720 - Psest_0600 0.15 -1.2 651,720 - Psest_0600 0.15 +1.0 651,720 - Psest_0600 0.15 -1.1 651,720 - Psest_0600 0.15 +0.4 651,724 - Psest_0600 0.16 -0.1 651,732 + Psest_0600 0.16 -0.4 651,732 + Psest_0600 0.16 +0.6 651,732 + Psest_0600 0.16 -0.7 651,732 + Psest_0600 0.16 +0.7 651,733 - Psest_0600 0.16 -0.1 651,733 - Psest_0600 0.16 -1.3 651,733 - Psest_0600 0.16 +1.9 651,733 - Psest_0600 0.16 -1.1 651,733 - Psest_0600 0.16 -2.0 651,733 - Psest_0600 0.16 +0.8 651,738 - Psest_0600 0.16 +0.3
Or see this region's nucleotide sequence