Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4101 and Psest_4102 are separated by 40 nucleotides Psest_4102 and Psest_4103 are separated by 119 nucleotides
Psest_4101: Psest_4101 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 4,281,218 to 4,282,168
_4101
Psest_4102: Psest_4102 - peroxiredoxin, Ohr subfamily, at 4,282,209 to 4,282,637
_4102
Psest_4103: Psest_4103 - AraC-type DNA-binding domain-containing proteins, at 4,282,757 to 4,283,593
_4103
Position (kb)
4282
4283 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4281.298 kb on - strand at 4281.319 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.459 kb on + strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.460 kb on - strand, within Psest_4101 at 4281.576 kb on + strand, within Psest_4101 at 4281.576 kb on + strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.577 kb on - strand, within Psest_4101 at 4281.732 kb on + strand, within Psest_4101 at 4281.732 kb on + strand, within Psest_4101 at 4281.812 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.008 kb on + strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.009 kb on - strand, within Psest_4101 at 4282.011 kb on + strand, within Psest_4101 at 4282.012 kb on - strand, within Psest_4101 at 4282.012 kb on - strand, within Psest_4101 at 4282.188 kb on + strand at 4282.189 kb on - strand at 4282.230 kb on + strand at 4282.231 kb on - strand at 4282.545 kb on + strand, within Psest_4102 at 4282.545 kb on + strand, within Psest_4102 at 4282.545 kb on + strand, within Psest_4102 at 4282.545 kb on + strand, within Psest_4102 at 4282.546 kb on - strand, within Psest_4102 at 4282.546 kb on - strand, within Psest_4102 at 4282.546 kb on - strand, within Psest_4102 at 4282.615 kb on + strand at 4282.615 kb on + strand at 4282.615 kb on + strand at 4282.691 kb on + strand at 4282.691 kb on + strand at 4282.691 kb on + strand at 4282.713 kb on + strand at 4283.411 kb on + strand, within Psest_4103 at 4283.411 kb on + strand, within Psest_4103 at 4283.411 kb on + strand, within Psest_4103
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 4,281,298 - -0.7 4,281,319 + Psest_4101 0.11 -0.8 4,281,459 + Psest_4101 0.25 +0.0 4,281,459 + Psest_4101 0.25 +1.2 4,281,459 + Psest_4101 0.25 -0.5 4,281,459 + Psest_4101 0.25 +0.3 4,281,459 + Psest_4101 0.25 -0.7 4,281,459 + Psest_4101 0.25 -1.0 4,281,459 + Psest_4101 0.25 -0.5 4,281,460 - Psest_4101 0.25 +0.1 4,281,460 - Psest_4101 0.25 -0.3 4,281,460 - Psest_4101 0.25 -0.9 4,281,460 - Psest_4101 0.25 +1.7 4,281,460 - Psest_4101 0.25 +0.7 4,281,460 - Psest_4101 0.25 -1.0 4,281,460 - Psest_4101 0.25 +0.1 4,281,460 - Psest_4101 0.25 +1.1 4,281,460 - Psest_4101 0.25 -1.2 4,281,576 + Psest_4101 0.38 +0.2 4,281,576 + Psest_4101 0.38 +0.4 4,281,577 - Psest_4101 0.38 -0.6 4,281,577 - Psest_4101 0.38 +1.9 4,281,577 - Psest_4101 0.38 +0.3 4,281,577 - Psest_4101 0.38 +0.0 4,281,732 + Psest_4101 0.54 -1.4 4,281,732 + Psest_4101 0.54 -2.5 4,281,812 + Psest_4101 0.62 +2.1 4,282,008 + Psest_4101 0.83 +1.4 4,282,008 + Psest_4101 0.83 +0.4 4,282,008 + Psest_4101 0.83 -0.1 4,282,008 + Psest_4101 0.83 +1.1 4,282,008 + Psest_4101 0.83 -0.3 4,282,008 + Psest_4101 0.83 -0.5 4,282,008 + Psest_4101 0.83 +0.3 4,282,009 - Psest_4101 0.83 -0.3 4,282,009 - Psest_4101 0.83 -2.3 4,282,009 - Psest_4101 0.83 -2.0 4,282,009 - Psest_4101 0.83 -0.3 4,282,009 - Psest_4101 0.83 +1.4 4,282,009 - Psest_4101 0.83 -2.3 4,282,009 - Psest_4101 0.83 +0.1 4,282,009 - Psest_4101 0.83 +0.4 4,282,009 - Psest_4101 0.83 -1.8 4,282,011 + Psest_4101 0.83 -1.8 4,282,012 - Psest_4101 0.83 +0.8 4,282,012 - Psest_4101 0.83 +0.8 4,282,188 + +0.5 4,282,189 - -0.0 4,282,230 + -1.8 4,282,231 - +0.4 4,282,545 + Psest_4102 0.78 +0.6 4,282,545 + Psest_4102 0.78 -2.1 4,282,545 + Psest_4102 0.78 -2.4 4,282,545 + Psest_4102 0.78 -1.6 4,282,546 - Psest_4102 0.79 +0.3 4,282,546 - Psest_4102 0.79 -2.1 4,282,546 - Psest_4102 0.79 +0.6 4,282,615 + -1.2 4,282,615 + +1.3 4,282,615 + +3.3 4,282,691 + +0.3 4,282,691 + +1.5 4,282,691 + -0.5 4,282,713 + -0.1 4,283,411 + Psest_4103 0.78 -1.0 4,283,411 + Psest_4103 0.78 -1.1 4,283,411 + Psest_4103 0.78 -1.1
Or see this region's nucleotide sequence