Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3506 and Psest_3507 are separated by 98 nucleotides Psest_3507 and Psest_3508 are separated by 3 nucleotides Psest_3508 and Psest_3509 are separated by 123 nucleotides
Psest_3506: Psest_3506 - Kef-type K+ transport system, predicted NAD-binding component, at 3,679,934 to 3,681,622
_3506
Psest_3507: Psest_3507 - FOG: EAL domain, at 3,681,721 to 3,682,533
_3507
Psest_3508: Psest_3508 - Putative intracellular protease/amidase, at 3,682,537 to 3,683,217
_3508
Psest_3509: Psest_3509 - Methyl-accepting chemotaxis protein, at 3,683,341 to 3,685,230
_3509
Position (kb)
3681
3682
3683 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3680.888 kb on + strand, within Psest_3506 at 3680.888 kb on + strand, within Psest_3506 at 3680.888 kb on + strand, within Psest_3506 at 3680.889 kb on - strand, within Psest_3506 at 3680.889 kb on - strand, within Psest_3506 at 3680.889 kb on - strand, within Psest_3506 at 3681.056 kb on + strand, within Psest_3506 at 3681.056 kb on + strand, within Psest_3506 at 3681.056 kb on + strand, within Psest_3506 at 3681.056 kb on + strand, within Psest_3506 at 3681.056 kb on + strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.057 kb on - strand, within Psest_3506 at 3681.083 kb on + strand, within Psest_3506 at 3681.083 kb on + strand, within Psest_3506 at 3681.084 kb on - strand, within Psest_3506 at 3681.306 kb on + strand, within Psest_3506 at 3681.306 kb on + strand, within Psest_3506 at 3681.842 kb on - strand, within Psest_3507 at 3681.881 kb on + strand, within Psest_3507 at 3681.881 kb on + strand, within Psest_3507 at 3681.881 kb on + strand, within Psest_3507 at 3681.882 kb on - strand, within Psest_3507 at 3681.882 kb on - strand, within Psest_3507 at 3682.063 kb on + strand, within Psest_3507 at 3682.531 kb on + strand at 3682.655 kb on + strand, within Psest_3508 at 3682.772 kb on + strand, within Psest_3508 at 3682.773 kb on - strand, within Psest_3508 at 3682.773 kb on - strand, within Psest_3508 at 3682.922 kb on + strand, within Psest_3508 at 3682.971 kb on + strand, within Psest_3508 at 3682.971 kb on + strand, within Psest_3508 at 3683.092 kb on + strand, within Psest_3508 at 3683.092 kb on + strand, within Psest_3508 at 3683.113 kb on + strand, within Psest_3508 at 3683.113 kb on + strand, within Psest_3508 at 3683.113 kb on + strand, within Psest_3508 at 3683.113 kb on + strand, within Psest_3508 at 3683.114 kb on - strand, within Psest_3508 at 3683.114 kb on - strand, within Psest_3508 at 3683.114 kb on - strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.123 kb on + strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.124 kb on - strand, within Psest_3508 at 3683.126 kb on + strand, within Psest_3508 at 3683.324 kb on + strand at 3683.324 kb on + strand at 3683.325 kb on - strand at 3683.325 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 3,680,888 + Psest_3506 0.56 -0.7 3,680,888 + Psest_3506 0.56 -1.0 3,680,888 + Psest_3506 0.56 +1.5 3,680,889 - Psest_3506 0.57 -0.8 3,680,889 - Psest_3506 0.57 +1.1 3,680,889 - Psest_3506 0.57 +0.1 3,681,056 + Psest_3506 0.66 +0.3 3,681,056 + Psest_3506 0.66 -0.1 3,681,056 + Psest_3506 0.66 -2.7 3,681,056 + Psest_3506 0.66 +1.5 3,681,056 + Psest_3506 0.66 -0.8 3,681,057 - Psest_3506 0.66 +1.1 3,681,057 - Psest_3506 0.66 +0.2 3,681,057 - Psest_3506 0.66 -1.6 3,681,057 - Psest_3506 0.66 -0.3 3,681,057 - Psest_3506 0.66 +1.1 3,681,057 - Psest_3506 0.66 +1.2 3,681,057 - Psest_3506 0.66 -0.7 3,681,057 - Psest_3506 0.66 -1.8 3,681,057 - Psest_3506 0.66 -0.9 3,681,057 - Psest_3506 0.66 -0.9 3,681,083 + Psest_3506 0.68 +0.5 3,681,083 + Psest_3506 0.68 -0.5 3,681,084 - Psest_3506 0.68 -0.1 3,681,306 + Psest_3506 0.81 +0.2 3,681,306 + Psest_3506 0.81 -1.8 3,681,842 - Psest_3507 0.15 +0.2 3,681,881 + Psest_3507 0.20 -0.5 3,681,881 + Psest_3507 0.20 -0.9 3,681,881 + Psest_3507 0.20 -0.6 3,681,882 - Psest_3507 0.20 -0.5 3,681,882 - Psest_3507 0.20 +2.6 3,682,063 + Psest_3507 0.42 +0.7 3,682,531 + -1.3 3,682,655 + Psest_3508 0.17 -1.1 3,682,772 + Psest_3508 0.35 -0.3 3,682,773 - Psest_3508 0.35 -2.0 3,682,773 - Psest_3508 0.35 +0.2 3,682,922 + Psest_3508 0.57 -1.5 3,682,971 + Psest_3508 0.64 +0.1 3,682,971 + Psest_3508 0.64 +1.7 3,683,092 + Psest_3508 0.81 -1.9 3,683,092 + Psest_3508 0.81 +0.4 3,683,113 + Psest_3508 0.85 +0.4 3,683,113 + Psest_3508 0.85 -3.3 3,683,113 + Psest_3508 0.85 +1.3 3,683,113 + Psest_3508 0.85 +1.2 3,683,114 - Psest_3508 0.85 -1.1 3,683,114 - Psest_3508 0.85 -0.6 3,683,114 - Psest_3508 0.85 -1.9 3,683,123 + Psest_3508 0.86 +2.0 3,683,123 + Psest_3508 0.86 -1.2 3,683,123 + Psest_3508 0.86 +0.2 3,683,123 + Psest_3508 0.86 -2.3 3,683,123 + Psest_3508 0.86 +0.2 3,683,123 + Psest_3508 0.86 +0.2 3,683,123 + Psest_3508 0.86 -0.1 3,683,123 + Psest_3508 0.86 -1.4 3,683,124 - Psest_3508 0.86 -0.1 3,683,124 - Psest_3508 0.86 +0.7 3,683,124 - Psest_3508 0.86 -2.4 3,683,124 - Psest_3508 0.86 -2.7 3,683,124 - Psest_3508 0.86 -0.7 3,683,124 - Psest_3508 0.86 +1.9 3,683,124 - Psest_3508 0.86 -2.5 3,683,124 - Psest_3508 0.86 +0.5 3,683,126 + Psest_3508 0.86 -2.6 3,683,324 + +1.0 3,683,324 + -1.1 3,683,325 - -0.3 3,683,325 - +0.3
Or see this region's nucleotide sequence