Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0198

Experiment: Carbenicillin 0.0065 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0197 and Psest_0198 are separated by 121 nucleotidesPsest_0198 and Psest_0199 are separated by 598 nucleotides Psest_0197: Psest_0197 - TRAP transporter, 4TM/12TM fusion protein, at 192,789 to 195,341 _0197 Psest_0198: Psest_0198 - TRAP transporter solute receptor, TAXI family, at 195,463 to 196,428 _0198 Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613 _0199 Position (kb) 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.870 kb on + strand, within Psest_0197at 194.872 kb on + strand, within Psest_0197at 194.872 kb on + strand, within Psest_0197at 194.873 kb on - strand, within Psest_0197at 194.873 kb on - strand, within Psest_0197at 194.884 kb on - strand, within Psest_0197at 194.949 kb on - strand, within Psest_0197at 195.189 kb on + strandat 195.190 kb on - strandat 195.465 kb on - strandat 195.465 kb on - strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.488 kb on + strandat 195.489 kb on - strandat 195.620 kb on + strand, within Psest_0198at 195.620 kb on + strand, within Psest_0198at 195.621 kb on - strand, within Psest_0198at 195.704 kb on + strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 196.061 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.304 kb on + strand, within Psest_0198at 196.305 kb on - strand, within Psest_0198at 196.305 kb on - strand, within Psest_0198at 196.307 kb on + strand, within Psest_0198at 196.308 kb on - strand, within Psest_0198at 196.308 kb on - strand, within Psest_0198at 196.361 kb on - strandat 196.499 kb on - strandat 196.499 kb on - strandat 196.556 kb on + strandat 196.574 kb on + strandat 196.575 kb on - strandat 196.575 kb on - strandat 196.621 kb on + strandat 196.622 kb on - strandat 196.622 kb on - strandat 196.622 kb on - strandat 196.702 kb on - strandat 196.907 kb on + strandat 197.120 kb on + strandat 197.120 kb on + strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.121 kb on - strandat 197.414 kb on + strand, within Psest_0199at 197.414 kb on + strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199at 197.415 kb on - strand, within Psest_0199

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml
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194,686 + Psest_0197 0.74 -0.2
194,686 + Psest_0197 0.74 +1.4
194,686 + Psest_0197 0.74 -1.0
194,686 + Psest_0197 0.74 +0.2
194,687 - Psest_0197 0.74 -0.3
194,687 - Psest_0197 0.74 +1.4
194,687 - Psest_0197 0.74 -0.2
194,687 - Psest_0197 0.74 +0.8
194,687 - Psest_0197 0.74 -0.8
194,687 - Psest_0197 0.74 -2.9
194,687 - Psest_0197 0.74 -1.0
194,687 - Psest_0197 0.74 -0.1
194,687 - Psest_0197 0.74 +0.2
194,687 - Psest_0197 0.74 +0.0
194,687 - Psest_0197 0.74 -0.9
194,870 + Psest_0197 0.82 -2.0
194,872 + Psest_0197 0.82 +0.4
194,872 + Psest_0197 0.82 +0.2
194,873 - Psest_0197 0.82 +2.8
194,873 - Psest_0197 0.82 +0.6
194,884 - Psest_0197 0.82 -0.7
194,949 - Psest_0197 0.85 +0.1
195,189 + -0.4
195,190 - +0.5
195,465 - +0.1
195,465 - +0.4
195,485 + +0.9
195,485 + +0.0
195,485 + +2.6
195,485 + -0.2
195,485 + +0.9
195,485 + -2.2
195,486 - -0.3
195,486 - -1.1
195,486 - -1.7
195,486 - -0.8
195,486 - -1.0
195,486 - -0.8
195,486 - -1.2
195,488 + -1.1
195,489 - -0.6
195,620 + Psest_0198 0.16 +2.4
195,620 + Psest_0198 0.16 +0.2
195,621 - Psest_0198 0.16 +0.0
195,704 + Psest_0198 0.25 -0.3
195,705 - Psest_0198 0.25 -1.3
195,705 - Psest_0198 0.25 -3.0
195,705 - Psest_0198 0.25 -0.8
195,705 - Psest_0198 0.25 -0.2
195,705 - Psest_0198 0.25 -0.9
195,705 - Psest_0198 0.25 -0.4
195,734 + Psest_0198 0.28 -0.6
195,734 + Psest_0198 0.28 +3.4
195,734 + Psest_0198 0.28 -1.3
195,734 + Psest_0198 0.28 +1.1
195,734 + Psest_0198 0.28 +0.2
195,734 + Psest_0198 0.28 +0.4
195,734 + Psest_0198 0.28 -0.3
195,735 - Psest_0198 0.28 +0.4
195,735 - Psest_0198 0.28 -0.3
195,735 - Psest_0198 0.28 -1.2
195,735 - Psest_0198 0.28 -0.3
195,735 - Psest_0198 0.28 +0.8
195,735 - Psest_0198 0.28 -0.3
195,738 - Psest_0198 0.28 -0.8
195,738 - Psest_0198 0.28 -2.3
195,738 - Psest_0198 0.28 -1.1
195,848 + Psest_0198 0.40 +3.3
195,848 + Psest_0198 0.40 -0.7
195,848 + Psest_0198 0.40 -1.8
195,849 - Psest_0198 0.40 +0.1
195,849 - Psest_0198 0.40 -0.8
195,849 - Psest_0198 0.40 +0.5
195,849 - Psest_0198 0.40 -0.6
196,061 - Psest_0198 0.62 -0.1
196,155 - Psest_0198 0.72 +2.7
196,155 - Psest_0198 0.72 -1.7
196,155 - Psest_0198 0.72 +0.9
196,304 + Psest_0198 0.87 -0.6
196,305 - Psest_0198 0.87 -1.6
196,305 - Psest_0198 0.87 +1.4
196,307 + Psest_0198 0.87 -1.0
196,308 - Psest_0198 0.87 -2.2
196,308 - Psest_0198 0.87 +0.7
196,361 - +2.2
196,499 - -0.9
196,499 - +0.1
196,556 + -0.4
196,574 + -0.8
196,575 - -0.6
196,575 - +2.7
196,621 + -0.9
196,622 - -0.4
196,622 - -0.4
196,622 - +1.2
196,702 - +1.8
196,907 + +1.3
197,120 + -2.4
197,120 + -2.3
197,121 - -0.7
197,121 - -0.3
197,121 - -0.8
197,121 - +0.8
197,121 - -0.3
197,121 - +2.1
197,121 - +0.5
197,414 + Psest_0199 0.24 -1.5
197,414 + Psest_0199 0.24 +1.7
197,415 - Psest_0199 0.24 -0.3
197,415 - Psest_0199 0.24 -0.5
197,415 - Psest_0199 0.24 +1.2
197,415 - Psest_0199 0.24 -0.8
197,415 - Psest_0199 0.24 +0.3
197,415 - Psest_0199 0.24 -2.8

Or see this region's nucleotide sequence