Experiment: Carbenicillin 0.0065 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0015 and Psest_0016 are separated by 146 nucleotides Psest_0016 and Psest_0017 overlap by 4 nucleotides Psest_0017 and Psest_0018 overlap by 4 nucleotides Psest_0018 and Psest_0019 are separated by 120 nucleotides
Psest_0015: Psest_0015 - Tetratricopeptide repeat., at 16,334 to 16,651
_0015
Psest_0016: Psest_0016 - ectoine/hydroxyectoine ABC transporter, ATP-binding protein, at 16,798 to 17,634
_0016
Psest_0017: Psest_0017 - ectoine/hydroxyectoine ABC transporter, permease protein EhuD, at 17,631 to 18,290
_0017
Psest_0018: Psest_0018 - ectoine/hydroxyectoine ABC transporter, permease protein EhuC, at 18,287 to 18,946
_0018
Psest_0019: Psest_0019 - ectoine/hydroxyectoine ABC transporter solute-binding protein, at 19,067 to 19,924
_0019
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 16.698 kb on + strand at 16.699 kb on - strand at 16.733 kb on + strand at 16.734 kb on - strand at 16.734 kb on - strand at 16.734 kb on - strand at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.287 kb on + strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.288 kb on - strand, within Psest_0016 at 17.416 kb on + strand, within Psest_0016 at 17.417 kb on - strand, within Psest_0016 at 17.628 kb on + strand at 17.629 kb on - strand at 17.629 kb on - strand at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.833 kb on + strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.834 kb on - strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.983 kb on + strand, within Psest_0017 at 17.984 kb on - strand, within Psest_0017 at 17.992 kb on + strand, within Psest_0017 at 18.046 kb on + strand, within Psest_0017 at 18.047 kb on - strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.057 kb on + strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.058 kb on - strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.061 kb on + strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.062 kb on - strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.073 kb on + strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.074 kb on - strand, within Psest_0017 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.375 kb on + strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.376 kb on - strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.744 kb on + strand, within Psest_0018 at 18.745 kb on - strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.795 kb on + strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018 at 18.796 kb on - strand, within Psest_0018
Per-strain Table
Position Strand Gene LocusTag Fraction Carbenicillin 0.0065 mg/ml remove 16,698 + +0.4 16,699 - -2.1 16,733 + +0.6 16,734 - -0.2 16,734 - +0.2 16,734 - -0.3 17,287 + Psest_0016 0.58 +0.4 17,287 + Psest_0016 0.58 -0.1 17,287 + Psest_0016 0.58 -0.2 17,287 + Psest_0016 0.58 -0.9 17,287 + Psest_0016 0.58 -0.6 17,287 + Psest_0016 0.58 +0.6 17,287 + Psest_0016 0.58 +0.1 17,288 - Psest_0016 0.59 +0.1 17,288 - Psest_0016 0.59 -0.2 17,288 - Psest_0016 0.59 -0.4 17,416 + Psest_0016 0.74 +2.0 17,417 - Psest_0016 0.74 +1.0 17,628 + +1.8 17,629 - +1.0 17,629 - +1.7 17,833 + Psest_0017 0.31 +0.1 17,833 + Psest_0017 0.31 -0.9 17,833 + Psest_0017 0.31 +0.4 17,834 - Psest_0017 0.31 -0.1 17,834 - Psest_0017 0.31 +1.1 17,834 - Psest_0017 0.31 -0.9 17,834 - Psest_0017 0.31 +0.6 17,983 + Psest_0017 0.53 -0.5 17,983 + Psest_0017 0.53 +0.5 17,983 + Psest_0017 0.53 -1.1 17,983 + Psest_0017 0.53 -0.4 17,984 - Psest_0017 0.53 +0.8 17,992 + Psest_0017 0.55 +1.0 18,046 + Psest_0017 0.63 +0.5 18,047 - Psest_0017 0.63 +1.4 18,057 + Psest_0017 0.65 +0.4 18,057 + Psest_0017 0.65 +0.7 18,058 - Psest_0017 0.65 +0.7 18,058 - Psest_0017 0.65 +1.7 18,058 - Psest_0017 0.65 -0.4 18,058 - Psest_0017 0.65 -0.9 18,061 + Psest_0017 0.65 +3.3 18,061 + Psest_0017 0.65 -1.7 18,061 + Psest_0017 0.65 -0.3 18,061 + Psest_0017 0.65 +0.2 18,062 - Psest_0017 0.65 -0.2 18,062 - Psest_0017 0.65 +0.3 18,062 - Psest_0017 0.65 -0.1 18,062 - Psest_0017 0.65 +1.9 18,062 - Psest_0017 0.65 +0.1 18,062 - Psest_0017 0.65 +1.4 18,062 - Psest_0017 0.65 -0.2 18,062 - Psest_0017 0.65 -0.2 18,062 - Psest_0017 0.65 -0.1 18,062 - Psest_0017 0.65 +0.8 18,062 - Psest_0017 0.65 +1.7 18,062 - Psest_0017 0.65 +0.4 18,073 + Psest_0017 0.67 +2.5 18,073 + Psest_0017 0.67 +1.0 18,074 - Psest_0017 0.67 -0.5 18,074 - Psest_0017 0.67 +2.4 18,375 + Psest_0018 0.13 -0.4 18,375 + Psest_0018 0.13 -0.1 18,375 + Psest_0018 0.13 -1.4 18,375 + Psest_0018 0.13 +1.1 18,375 + Psest_0018 0.13 -2.5 18,375 + Psest_0018 0.13 +0.2 18,375 + Psest_0018 0.13 +0.3 18,375 + Psest_0018 0.13 -0.0 18,376 - Psest_0018 0.13 +0.8 18,376 - Psest_0018 0.13 +0.8 18,376 - Psest_0018 0.13 -1.6 18,376 - Psest_0018 0.13 +0.2 18,376 - Psest_0018 0.13 -1.0 18,376 - Psest_0018 0.13 +0.0 18,744 + Psest_0018 0.69 +0.5 18,744 + Psest_0018 0.69 -0.1 18,744 + Psest_0018 0.69 +2.4 18,745 - Psest_0018 0.69 +1.5 18,795 + Psest_0018 0.77 -1.2 18,795 + Psest_0018 0.77 -2.7 18,795 + Psest_0018 0.77 +0.2 18,795 + Psest_0018 0.77 -0.9 18,795 + Psest_0018 0.77 +0.1 18,795 + Psest_0018 0.77 -1.8 18,795 + Psest_0018 0.77 +0.9 18,795 + Psest_0018 0.77 +1.0 18,795 + Psest_0018 0.77 -0.8 18,795 + Psest_0018 0.77 -2.3 18,795 + Psest_0018 0.77 -0.2 18,795 + Psest_0018 0.77 -1.6 18,795 + Psest_0018 0.77 -0.9 18,795 + Psest_0018 0.77 -0.9 18,795 + Psest_0018 0.77 -0.2 18,795 + Psest_0018 0.77 -0.8 18,796 - Psest_0018 0.77 +0.3 18,796 - Psest_0018 0.77 +3.9 18,796 - Psest_0018 0.77 +0.2
Or see this region's nucleotide sequence