Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12640

Experiment: RCH2_defined_1percent_glucose with Chloride 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12635 and BWI76_RS12640 are separated by 216 nucleotidesBWI76_RS12640 and BWI76_RS12645 are separated by 125 nucleotidesBWI76_RS12645 and BWI76_RS12650 are separated by 199 nucleotides BWI76_RS12635: BWI76_RS12635 - cold-shock protein, at 2,637,768 to 2,637,956 _RS12635 BWI76_RS12640: BWI76_RS12640 - hypothetical protein, at 2,638,173 to 2,638,802 _RS12640 BWI76_RS12645: BWI76_RS12645 - membrane protein, at 2,638,928 to 2,639,509 _RS12645 BWI76_RS12650: BWI76_RS12650 - membrane protein, at 2,639,709 to 2,640,272 _RS12650 Position (kb) 2638 2639Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2637.249 kb on + strandat 2637.275 kb on + strandat 2637.299 kb on - strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.375 kb on + strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.383 kb on - strandat 2637.394 kb on + strandat 2637.397 kb on - strandat 2637.432 kb on + strandat 2637.471 kb on - strandat 2637.478 kb on - strandat 2637.520 kb on - strandat 2637.533 kb on + strandat 2637.589 kb on + strandat 2637.589 kb on + strandat 2637.602 kb on + strandat 2637.610 kb on - strandat 2637.613 kb on + strandat 2637.613 kb on + strandat 2637.646 kb on + strandat 2637.656 kb on + strandat 2637.717 kb on + strandat 2637.758 kb on + strandat 2637.764 kb on + strandat 2637.772 kb on - strandat 2637.772 kb on - strandat 2637.772 kb on - strandat 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on + strand, within BWI76_RS12635at 2637.802 kb on - strand, within BWI76_RS12635at 2637.810 kb on + strand, within BWI76_RS12635at 2637.810 kb on - strand, within BWI76_RS12635at 2637.810 kb on - strandat 2637.810 kb on - strand, within BWI76_RS12635at 2637.813 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strandat 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.815 kb on + strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.823 kb on - strand, within BWI76_RS12635at 2637.825 kb on - strand, within BWI76_RS12635at 2638.023 kb on + strandat 2638.094 kb on - strandat 2638.097 kb on + strandat 2638.173 kb on + strandat 2638.214 kb on + strandat 2638.214 kb on + strandat 2638.285 kb on - strand, within BWI76_RS12640at 2638.337 kb on + strand, within BWI76_RS12640at 2638.344 kb on + strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.352 kb on - strand, within BWI76_RS12640at 2638.401 kb on - strand, within BWI76_RS12640at 2638.423 kb on + strand, within BWI76_RS12640at 2638.423 kb on + strand, within BWI76_RS12640at 2638.436 kb on + strand, within BWI76_RS12640at 2638.450 kb on + strand, within BWI76_RS12640at 2638.458 kb on - strand, within BWI76_RS12640at 2638.458 kb on - strandat 2638.546 kb on - strand, within BWI76_RS12640at 2638.594 kb on - strand, within BWI76_RS12640at 2638.638 kb on - strand, within BWI76_RS12640at 2639.007 kb on - strand, within BWI76_RS12645at 2639.008 kb on - strand, within BWI76_RS12645at 2639.039 kb on + strand, within BWI76_RS12645at 2639.045 kb on + strand, within BWI76_RS12645at 2639.050 kb on + strand, within BWI76_RS12645at 2639.089 kb on + strand, within BWI76_RS12645at 2639.125 kb on + strand, within BWI76_RS12645at 2639.185 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.244 kb on + strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.252 kb on - strand, within BWI76_RS12645at 2639.285 kb on + strand, within BWI76_RS12645at 2639.290 kb on + strand, within BWI76_RS12645at 2639.320 kb on - strand, within BWI76_RS12645at 2639.367 kb on + strand, within BWI76_RS12645at 2639.403 kb on + strand, within BWI76_RS12645at 2639.403 kb on - strand, within BWI76_RS12645at 2639.419 kb on + strand, within BWI76_RS12645at 2639.450 kb on + strand, within BWI76_RS12645at 2639.458 kb on - strandat 2639.468 kb on + strandat 2639.472 kb on + strandat 2639.480 kb on - strandat 2639.482 kb on + strandat 2639.565 kb on + strandat 2639.578 kb on - strandat 2639.598 kb on - strandat 2639.664 kb on + strandat 2639.740 kb on + strandat 2639.743 kb on - strandat 2639.745 kb on + strandat 2639.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_1percent_glucose with Chloride 100 mM
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2,637,249 + +1.3
2,637,275 + -1.5
2,637,299 - -2.4
2,637,375 + +0.2
2,637,375 + +0.3
2,637,375 + +1.6
2,637,375 + +2.9
2,637,375 + +0.6
2,637,375 + +1.1
2,637,375 + -0.6
2,637,375 + +0.2
2,637,375 + -2.1
2,637,375 + +0.3
2,637,375 + +1.7
2,637,375 + +1.0
2,637,375 + -0.4
2,637,375 + -1.0
2,637,375 + -0.5
2,637,375 + -0.3
2,637,383 - +1.3
2,637,383 - +1.3
2,637,383 - +1.3
2,637,383 - -1.0
2,637,383 - +1.3
2,637,383 - +0.3
2,637,383 - +1.3
2,637,383 - -0.2
2,637,394 + -0.7
2,637,397 - -0.3
2,637,432 + -0.1
2,637,471 - +0.3
2,637,478 - +1.9
2,637,520 - -0.5
2,637,533 + +0.5
2,637,589 + +0.3
2,637,589 + +1.6
2,637,602 + +1.1
2,637,610 - +1.3
2,637,613 + +0.2
2,637,613 + +0.6
2,637,646 + -1.5
2,637,656 + +1.7
2,637,717 + -0.3
2,637,758 + -0.0
2,637,764 + -0.3
2,637,772 - -3.1
2,637,772 - +1.1
2,637,772 - -0.6
2,637,802 + BWI76_RS12635 0.18 +1.3
2,637,802 + BWI76_RS12635 0.18 +3.3
2,637,802 + BWI76_RS12635 0.18 +0.2
2,637,802 - BWI76_RS12635 0.18 +2.6
2,637,810 + BWI76_RS12635 0.22 -0.6
2,637,810 - BWI76_RS12635 0.22 +0.3
2,637,810 - -0.3
2,637,810 - BWI76_RS12635 0.22 -0.7
2,637,813 + BWI76_RS12635 0.24 -0.8
2,637,815 + BWI76_RS12635 0.25 -0.9
2,637,815 + BWI76_RS12635 0.25 -0.3
2,637,815 + BWI76_RS12635 0.25 +0.6
2,637,815 + BWI76_RS12635 0.25 +0.3
2,637,815 + BWI76_RS12635 0.25 +0.8
2,637,815 + -0.3
2,637,815 + BWI76_RS12635 0.25 -0.3
2,637,815 + +0.3
2,637,815 + BWI76_RS12635 0.25 +0.1
2,637,815 + BWI76_RS12635 0.25 +0.3
2,637,815 + +2.3
2,637,815 + BWI76_RS12635 0.25 -1.0
2,637,815 + -0.3
2,637,815 + BWI76_RS12635 0.25 -0.6
2,637,815 + BWI76_RS12635 0.25 -1.0
2,637,815 + BWI76_RS12635 0.25 -0.5
2,637,815 + BWI76_RS12635 0.25 +1.6
2,637,815 + BWI76_RS12635 0.25 +0.2
2,637,815 + BWI76_RS12635 0.25 -1.6
2,637,815 + BWI76_RS12635 0.25 +0.2
2,637,815 + BWI76_RS12635 0.25 +0.2
2,637,815 + BWI76_RS12635 0.25 -1.3
2,637,815 + BWI76_RS12635 0.25 -1.5
2,637,823 - BWI76_RS12635 0.29 +1.3
2,637,823 - BWI76_RS12635 0.29 +1.9
2,637,823 - BWI76_RS12635 0.29 +0.3
2,637,825 - BWI76_RS12635 0.30 +0.3
2,638,023 + +4.3
2,638,094 - +1.3
2,638,097 + -0.5
2,638,173 + +0.3
2,638,214 + -0.3
2,638,214 + +1.3
2,638,285 - BWI76_RS12640 0.18 +0.3
2,638,337 + BWI76_RS12640 0.26 +1.3
2,638,344 + BWI76_RS12640 0.27 -0.9
2,638,352 - BWI76_RS12640 0.28 -0.7
2,638,352 - BWI76_RS12640 0.28 -1.5
2,638,352 - BWI76_RS12640 0.28 -1.0
2,638,401 - BWI76_RS12640 0.36 +1.3
2,638,423 + BWI76_RS12640 0.40 -2.5
2,638,423 + BWI76_RS12640 0.40 +0.6
2,638,436 + BWI76_RS12640 0.42 +0.3
2,638,450 + BWI76_RS12640 0.44 +2.6
2,638,458 - BWI76_RS12640 0.45 -1.2
2,638,458 - +2.9
2,638,546 - BWI76_RS12640 0.59 -1.2
2,638,594 - BWI76_RS12640 0.67 +0.2
2,638,638 - BWI76_RS12640 0.74 -0.3
2,639,007 - BWI76_RS12645 0.14 -0.2
2,639,008 - BWI76_RS12645 0.14 -1.3
2,639,039 + BWI76_RS12645 0.19 +1.4
2,639,045 + BWI76_RS12645 0.20 -0.5
2,639,050 + BWI76_RS12645 0.21 -1.7
2,639,089 + BWI76_RS12645 0.28 -1.1
2,639,125 + BWI76_RS12645 0.34 -0.6
2,639,185 + BWI76_RS12645 0.44 +0.3
2,639,244 + BWI76_RS12645 0.54 +1.9
2,639,244 + BWI76_RS12645 0.54 +0.9
2,639,244 + BWI76_RS12645 0.54 +0.8
2,639,244 + BWI76_RS12645 0.54 +0.1
2,639,244 + BWI76_RS12645 0.54 -1.5
2,639,252 - BWI76_RS12645 0.56 -0.1
2,639,252 - BWI76_RS12645 0.56 -0.7
2,639,252 - BWI76_RS12645 0.56 +0.7
2,639,252 - BWI76_RS12645 0.56 +0.1
2,639,252 - BWI76_RS12645 0.56 -0.5
2,639,252 - BWI76_RS12645 0.56 +0.6
2,639,285 + BWI76_RS12645 0.61 -0.7
2,639,290 + BWI76_RS12645 0.62 -0.5
2,639,320 - BWI76_RS12645 0.67 -2.9
2,639,367 + BWI76_RS12645 0.75 +1.3
2,639,403 + BWI76_RS12645 0.82 +0.6
2,639,403 - BWI76_RS12645 0.82 -2.0
2,639,419 + BWI76_RS12645 0.84 -0.3
2,639,450 + BWI76_RS12645 0.90 -1.1
2,639,458 - +0.3
2,639,468 + -2.1
2,639,472 + +0.9
2,639,480 - +0.3
2,639,482 + -0.0
2,639,565 + -1.1
2,639,578 - -0.1
2,639,598 - +0.5
2,639,664 + +0.7
2,639,740 + +0.2
2,639,743 - +0.8
2,639,745 + +0.9
2,639,761 + -0.3

Or see this region's nucleotide sequence