Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17880

Experiment: p-Coumaric (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) 5 mM
4,058,515	-		PFLU_RS17870	0.67	+1.2
4,058,515	-		PFLU_RS17870	0.67	-0.1
4,058,972	+				+0.5
4,058,972	+				-1.1
4,058,972	+				-0.2
4,058,972	+				-0.3
4,058,973	-				+1.1
4,058,973	-				-0.9
4,058,973	-				-2.0
4,058,973	-				+1.1
4,059,008	+				-0.1
4,059,009	-				-0.4
4,059,072	-		PFLU_RS17875	0.15	-0.0
4,059,131	+		PFLU_RS17875	0.28	-1.1
4,059,132	-		PFLU_RS17875	0.29	-2.0
4,059,146	+		PFLU_RS17875	0.32	-0.4
4,059,146	+		PFLU_RS17875	0.32	+1.8
4,059,146	+		PFLU_RS17875	0.32	+0.1
4,059,146	+		PFLU_RS17875	0.32	-1.6
4,059,146	+		PFLU_RS17875	0.32	-0.4
4,059,146	+		PFLU_RS17875	0.32	+2.1
4,059,146	+		PFLU_RS17875	0.32	+0.2
4,059,147	-		PFLU_RS17875	0.32	+2.1
4,059,147	-		PFLU_RS17875	0.32	-0.3
4,059,147	-		PFLU_RS17875	0.32	+2.1
4,059,147	-		PFLU_RS17875	0.32	-1.9
4,059,147	-		PFLU_RS17875	0.32	-1.1
4,059,147	-		PFLU_RS17875	0.32	+1.5
4,059,147	-		PFLU_RS17875	0.32	+2.6
4,059,194	+		PFLU_RS17875	0.42	-0.1
4,059,194	+		PFLU_RS17875	0.42	+1.1
4,059,195	-		PFLU_RS17875	0.42	-1.3
4,059,388	+		PFLU_RS17875	0.84	+2.2
4,059,424	+				+0.6
4,059,459	+				+0.5
4,059,460	-				+1.2
4,059,460	-				+1.8
4,059,524	-				-0.3
4,059,540	-				-0.3
4,059,674	+		PFLU_RS17880	0.17	-0.4
4,059,800	-		PFLU_RS17880	0.28	-0.9
4,059,800	-		PFLU_RS17880	0.28	+0.7
4,059,846	+		PFLU_RS17880	0.32	+1.6
4,059,846	+		PFLU_RS17880	0.32	-1.4
4,059,847	-		PFLU_RS17880	0.32	-2.0
4,059,847	-		PFLU_RS17880	0.32	-0.0
4,059,847	-		PFLU_RS17880	0.32	+0.8
4,059,908	+		PFLU_RS17880	0.37	+0.5
4,059,979	+		PFLU_RS17880	0.43	+0.5
4,059,980	-		PFLU_RS17880	0.43	-1.5
4,060,252	+		PFLU_RS17880	0.65	-2.5
4,060,252	+		PFLU_RS17880	0.65	+1.3
4,060,453	+		PFLU_RS17880	0.82	+0.1
4,060,517	-		PFLU_RS17880	0.87	+1.3
4,060,546	+		PFLU_RS17880	0.89	-1.1
4,060,546	+		PFLU_RS17880	0.89	-0.6
4,060,615	+				+0.4
4,060,616	-				+0.5
4,060,616	-				+1.5
4,060,646	-				+0.9
4,060,708	-				-2.0
4,060,716	+				+0.5
4,060,717	-				-1.3
4,060,717	-				+1.2
4,060,749	+				+0.9
4,060,749	+				-0.9
4,060,749	+				-1.3
4,060,749	+				-1.8
4,060,749	+				-0.5
4,060,750	-				-2.3
4,060,750	-				-1.6
4,060,750	-				-0.0
4,060,750	-				-0.8
4,060,774	+		PFLU_RS17885	0.10	-1.4
4,060,774	+		PFLU_RS17885	0.10	+1.2
4,060,775	-		PFLU_RS17885	0.10	-1.1
4,060,781	+		PFLU_RS17885	0.11	-0.8
4,060,781	+		PFLU_RS17885	0.11	-2.3
4,060,781	+		PFLU_RS17885	0.11	+0.8
4,060,781	+		PFLU_RS17885	0.11	-1.5
4,060,782	-		PFLU_RS17885	0.11	-0.4
4,060,782	-		PFLU_RS17885	0.11	-0.2
4,061,124	+		PFLU_RS17885	0.46	+0.5
4,061,124	+		PFLU_RS17885	0.46	+1.9
4,061,124	+		PFLU_RS17885	0.46	-0.1
4,061,125	-		PFLU_RS17885	0.46	-0.1
4,061,125	-		PFLU_RS17885	0.46	-0.9
4,061,125	-		PFLU_RS17885	0.46	-0.5
4,061,125	-		PFLU_RS17885	0.46	-1.9
4,061,125	-		PFLU_RS17885	0.46	-0.1
4,061,125	-		PFLU_RS17885	0.46	-0.8
4,061,128	+		PFLU_RS17885	0.47	+2.6
4,061,193	+		PFLU_RS17885	0.53	+0.5
4,061,193	+		PFLU_RS17885	0.53	-1.6
4,061,193	+		PFLU_RS17885	0.53	+0.2
4,061,193	+		PFLU_RS17885	0.53	-2.6
4,061,194	-		PFLU_RS17885	0.53	-0.8
4,061,194	-		PFLU_RS17885	0.53	-0.5
4,061,310	+		PFLU_RS17885	0.65	+1.2
4,061,400	+		PFLU_RS17885	0.74	+0.5
4,061,463	+		PFLU_RS17885	0.81	+1.1
4,061,463	+		PFLU_RS17885	0.81	-1.6
4,061,464	-		PFLU_RS17885	0.81	-0.8
4,061,493	+		PFLU_RS17885	0.84	-2.9
4,061,493	+		PFLU_RS17885	0.84	+0.5
4,061,494	-		PFLU_RS17885	0.84	-1.0
4,061,557	+				+1.8
4,061,558	-				+2.8
4,061,558	-				-1.1
4,061,558	-				+0.3
4,061,559	+				-2.4
4,061,559	+				-1.3