Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16140

Experiment: p-Coumaric (C) 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	p-Coumaric (C) 5 mM
3,667,213	+		PFLU_RS16135	0.42	-2.4
3,667,213	+		PFLU_RS16135	0.42	+2.2
3,667,213	+		PFLU_RS16135	0.42	-1.3
3,667,213	+		PFLU_RS16135	0.42	+4.4
3,667,213	+		PFLU_RS16135	0.42	-2.0
3,667,214	-		PFLU_RS16135	0.42	-1.3
3,667,214	-		PFLU_RS16135	0.42	-1.8
3,667,214	-		PFLU_RS16135	0.42	-0.0
3,667,214	-		PFLU_RS16135	0.42	-0.7
3,667,262	-		PFLU_RS16135	0.46	+0.0
3,667,262	-		PFLU_RS16135	0.46	+0.7
3,667,267	+		PFLU_RS16135	0.46	-1.5
3,667,267	+		PFLU_RS16135	0.46	-0.8
3,667,267	+		PFLU_RS16135	0.46	-0.1
3,667,267	+		PFLU_RS16135	0.46	-0.1
3,667,267	+		PFLU_RS16135	0.46	+0.5
3,667,267	+		PFLU_RS16135	0.46	-1.1
3,667,268	-		PFLU_RS16135	0.46	+0.7
3,667,268	-		PFLU_RS16135	0.46	-0.3
3,667,288	+		PFLU_RS16135	0.48	+0.0
3,667,288	+		PFLU_RS16135	0.48	-0.8
3,667,288	+		PFLU_RS16135	0.48	-1.3
3,667,289	-		PFLU_RS16135	0.48	-1.0
3,667,289	-		PFLU_RS16135	0.48	+1.5
3,667,289	-		PFLU_RS16135	0.48	+0.5
3,667,289	-		PFLU_RS16135	0.48	+3.8
3,667,321	+		PFLU_RS16135	0.50	+0.6
3,667,321	+		PFLU_RS16135	0.50	+0.4
3,667,321	+		PFLU_RS16135	0.50	+2.0
3,667,357	+		PFLU_RS16135	0.53	-0.6
3,667,369	+		PFLU_RS16135	0.54	-2.0
3,667,447	+		PFLU_RS16135	0.60	-0.5
3,667,447	+		PFLU_RS16135	0.60	+0.5
3,667,447	+		PFLU_RS16135	0.60	-0.7
3,667,447	+		PFLU_RS16135	0.60	+0.4
3,667,447	+		PFLU_RS16135	0.60	-2.1
3,667,447	+		PFLU_RS16135	0.60	+1.5
3,667,447	+		PFLU_RS16135	0.60	-0.4
3,667,447	+		PFLU_RS16135	0.60	+0.1
3,667,447	+		PFLU_RS16135	0.60	-1.5
3,667,447	+		PFLU_RS16135	0.60	+0.9
3,667,447	+		PFLU_RS16135	0.60	-1.0
3,667,448	-		PFLU_RS16135	0.60	+1.3
3,667,448	-		PFLU_RS16135	0.60	-0.5
3,667,448	-		PFLU_RS16135	0.60	-1.2
3,667,448	-		PFLU_RS16135	0.60	+2.8
3,667,448	-		PFLU_RS16135	0.60	+2.7
3,667,448	-		PFLU_RS16135	0.60	+0.5
3,667,448	-		PFLU_RS16135	0.60	+2.0
3,667,448	-		PFLU_RS16135	0.60	+0.7
3,667,448	-		PFLU_RS16135	0.60	-0.9
3,667,448	-		PFLU_RS16135	0.60	+0.0
3,667,448	-		PFLU_RS16135	0.60	+0.3
3,667,448	-		PFLU_RS16135	0.60	-0.8
3,667,451	-		PFLU_RS16135	0.61	-1.4
3,667,451	-		PFLU_RS16135	0.61	-0.8
3,667,573	+		PFLU_RS16135	0.70	+2.0
3,667,574	-		PFLU_RS16135	0.70	+2.3
3,667,574	-		PFLU_RS16135	0.70	+0.3
3,667,681	+		PFLU_RS16135	0.79	-1.5
3,667,682	-		PFLU_RS16135	0.79	-1.3
3,667,682	-		PFLU_RS16135	0.79	-1.9
3,667,682	-		PFLU_RS16135	0.79	-0.5
3,667,863	+				+0.5
3,667,910	-				-0.5
3,667,910	-				-0.1
3,667,910	-				-1.1
3,667,951	+				-1.4
3,668,090	+				+0.9
3,668,090	+				+2.0
3,668,090	+				-0.8
3,668,090	+				+1.0
3,668,090	+				-1.4
3,668,090	+				-2.3
3,668,090	+				-1.0
3,668,090	+				-2.9
3,668,090	+				-0.8
3,668,090	+				-1.1
3,668,090	+				-2.0
3,668,090	+				+2.5
3,668,090	+				-0.8
3,668,091	-				-2.3
3,668,091	-				-1.1
3,668,091	-				-0.3
3,668,091	-				-1.5
3,668,091	-				-3.3
3,668,091	-				+0.4
3,668,091	-				-0.5
3,668,091	-				-0.5
3,668,115	+				+3.0
3,668,129	-				-1.1
3,668,129	-				+0.2
3,668,132	+				-2.5
3,668,132	+				+1.2
3,668,132	+				-0.8
3,668,132	+				+0.8
3,668,132	+				+0.5
3,668,132	+				-0.7
3,668,132	+				-1.4
3,668,132	+				-2.4
3,668,132	+				-0.8
3,668,133	-				-2.1
3,668,133	-				-0.3
3,668,133	-				-2.2
3,668,133	-				+0.7
3,668,133	-				-1.7
3,668,133	-				-1.5
3,668,133	-				+1.0
3,668,133	-				+0.0
3,668,133	-				+1.5
3,668,133	-				-1.2
3,668,133	-				-1.5
3,668,133	-				+0.1
3,668,133	-				+0.9
3,668,502	+		PFLU_RS16140	0.52	-1.7
3,668,502	+		PFLU_RS16140	0.52	+0.9
3,668,577	+		PFLU_RS16140	0.64	+1.1
3,668,628	+		PFLU_RS16140	0.73	-0.8
3,668,628	+		PFLU_RS16140	0.73	+1.0
3,668,645	-		PFLU_RS16140	0.75	+0.5
3,668,656	+		PFLU_RS16140	0.77	+1.5
3,668,656	+		PFLU_RS16140	0.77	-1.0
3,668,656	+		PFLU_RS16140	0.77	-1.0
3,668,656	+		PFLU_RS16140	0.77	-0.8
3,668,656	+		PFLU_RS16140	0.77	+2.2
3,668,657	-		PFLU_RS16140	0.77	+0.9
3,668,657	-		PFLU_RS16140	0.77	-1.0
3,668,657	-		PFLU_RS16140	0.77	-0.5
3,668,658	+		PFLU_RS16140	0.78	-1.0
3,668,658	+		PFLU_RS16140	0.78	+0.0
3,668,658	+		PFLU_RS16140	0.78	+1.6
3,668,658	+		PFLU_RS16140	0.78	-0.6
3,668,658	+		PFLU_RS16140	0.78	+0.0
3,668,658	+		PFLU_RS16140	0.78	-0.3
3,668,659	-		PFLU_RS16140	0.78	-2.0
3,668,659	-		PFLU_RS16140	0.78	+0.2
3,668,659	-		PFLU_RS16140	0.78	-1.0
3,669,167	+		PFLU_RS16145	0.53	-0.5
3,669,191	+		PFLU_RS16145	0.57	-0.2
3,669,191	+		PFLU_RS16145	0.57	+0.0
3,669,192	-		PFLU_RS16145	0.57	-2.6
3,669,192	-		PFLU_RS16145	0.57	+1.4
3,669,192	-		PFLU_RS16145	0.57	-1.6
3,669,192	-		PFLU_RS16145	0.57	-2.1
3,669,192	-		PFLU_RS16145	0.57	-0.1
3,669,218	+		PFLU_RS16145	0.62	+0.6
3,669,219	-		PFLU_RS16145	0.62	+0.5
3,669,219	-		PFLU_RS16145	0.62	+0.5
3,669,219	-		PFLU_RS16145	0.62	+1.3
3,669,304	+		PFLU_RS16145	0.76	+0.5
3,669,304	+		PFLU_RS16145	0.76	+1.1
3,669,304	+		PFLU_RS16145	0.76	-0.4
3,669,304	+		PFLU_RS16145	0.76	+1.1
3,669,304	+		PFLU_RS16145	0.76	+0.2
3,669,304	+		PFLU_RS16145	0.76	-1.4
3,669,305	-		PFLU_RS16145	0.76	+0.5
3,669,305	-		PFLU_RS16145	0.76	+1.2
3,669,305	-		PFLU_RS16145	0.76	-0.2
3,669,305	-		PFLU_RS16145	0.76	+0.7
3,669,384	+		PFLU_RS16145	0.90	+0.9
3,669,384	+		PFLU_RS16145	0.90	+2.0
3,669,384	+		PFLU_RS16145	0.90	+1.5
3,669,385	-		PFLU_RS16145	0.90	+0.0
3,669,385	-		PFLU_RS16145	0.90	-1.0
3,669,390	+				+0.1
3,669,435	-				-2.0
3,669,435	-				-1.1
3,669,435	-				-1.2
3,669,512	+				-3.1
3,669,513	-				+1.6
3,669,513	-				+2.0
3,669,513	-				+1.7
3,669,513	-				-2.2
3,669,513	-				-0.3
3,669,559	+		PFLU_RS16150	0.16	+0.1
3,669,559	+		PFLU_RS16150	0.16	-0.3
3,669,560	-		PFLU_RS16150	0.17	+0.2
3,669,590	+		PFLU_RS16150	0.21	-0.3
3,669,590	+		PFLU_RS16150	0.21	-1.0
3,669,590	+		PFLU_RS16150	0.21	-1.6
3,669,590	+		PFLU_RS16150	0.21	-0.5
3,669,590	+		PFLU_RS16150	0.21	-0.8
3,669,590	+		PFLU_RS16150	0.21	-1.3
3,669,590	+		PFLU_RS16150	0.21	+0.3
3,669,590	+		PFLU_RS16150	0.21	-2.3
3,669,590	+		PFLU_RS16150	0.21	-1.8
3,669,590	+		PFLU_RS16150	0.21	+0.5
3,669,590	+		PFLU_RS16150	0.21	+0.6
3,669,591	-		PFLU_RS16150	0.21	-1.7
3,669,591	-		PFLU_RS16150	0.21	-0.2
3,669,591	-		PFLU_RS16150	0.21	+1.2
3,669,591	-		PFLU_RS16150	0.21	+1.0
3,669,591	-		PFLU_RS16150	0.21	+0.6
3,669,591	-		PFLU_RS16150	0.21	+0.4
3,669,591	-		PFLU_RS16150	0.21	-1.4
3,669,591	-		PFLU_RS16150	0.21	-1.8
3,669,591	-		PFLU_RS16150	0.21	-0.3
3,669,591	-		PFLU_RS16150	0.21	+0.0
3,669,591	-		PFLU_RS16150	0.21	-1.2
3,669,591	-		PFLU_RS16150	0.21	-0.3
3,669,591	-		PFLU_RS16150	0.21	-1.5
3,669,591	-		PFLU_RS16150	0.21	-0.2
3,669,591	-		PFLU_RS16150	0.21	+0.6
3,669,591	-		PFLU_RS16150	0.21	-1.5
3,669,591	-		PFLU_RS16150	0.21	-0.3
3,669,591	-		PFLU_RS16150	0.21	+0.7
3,669,594	+		PFLU_RS16150	0.21	+1.0
3,669,594	+		PFLU_RS16150	0.21	-1.3
3,669,594	+		PFLU_RS16150	0.21	-2.2
3,669,594	+		PFLU_RS16150	0.21	-1.4
3,669,595	-		PFLU_RS16150	0.22	-0.1
3,669,595	-		PFLU_RS16150	0.22	+1.0
3,669,643	-		PFLU_RS16150	0.28	+1.0
3,669,643	-		PFLU_RS16150	0.28	+0.5
3,669,676	+		PFLU_RS16150	0.33	-0.2
3,669,676	+		PFLU_RS16150	0.33	-0.3
3,669,676	+		PFLU_RS16150	0.33	+0.5
3,669,676	+		PFLU_RS16150	0.33	+1.0
3,669,676	+		PFLU_RS16150	0.33	-0.8
3,669,676	+		PFLU_RS16150	0.33	+5.0
3,669,677	-		PFLU_RS16150	0.33	+0.8
3,669,677	-		PFLU_RS16150	0.33	+0.8
3,669,677	-		PFLU_RS16150	0.33	-0.9
3,669,748	+		PFLU_RS16150	0.43	-0.4
3,669,748	+		PFLU_RS16150	0.43	+0.5
3,669,748	+		PFLU_RS16150	0.43	+0.3
3,669,749	-		PFLU_RS16150	0.44	-0.3
3,669,749	-		PFLU_RS16150	0.44	+2.0
3,669,749	-		PFLU_RS16150	0.44	+1.2
3,669,749	-		PFLU_RS16150	0.44	-1.2